General features
| Gene ID | MPN189
|
| Type | CDS
|
| From | 230703
|
| To | 231077
|
| Strand | +
|
| General name | rpsM
|
| Definition | ribosomal protein S13
|
| nt length | 375
|
| aa length | 124
|
| m.w. | 14179.40
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE9940 rpsM ribosomal protein S13 1316942:1316568 | 187 | 3.9e-64
|
| mgen | WP_009885860.1 30S ribosomal protein S13 [Mycoplasma genitalium] | 226 | 3.8e-80
|
| mpul | WP_010925364.1 30S ribosomal protein S13 [Mycoplasma pulmonis] | 149 | 2.6e-49
|
| mmob | WP_011264779.1 30S ribosomal protein S13 [Mycoplasma mobile] | 160 | 7.2e-54
|
| mmyc | NP_975699.1 30S ribosomal protein S13 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 162 | 1.1e-54
|
| mgal | WP_011113889.1 30S ribosomal protein S13 [Mycoplasma gallisepticum] | 186 | 5.9e-64
|
| uure | WP_004025797.1 30S ribosomal protein S13 [Ureaplasma urealyticum] | 167 | 1.9e-56
|
| phyt | WP_011160600.1 MULTISPECIES: 30S ribosomal protein S13 [Candidatus Phytoplasma asteris] | 147 | 7.3e-49
|
| bsub | NP_388022.2 ribosomal protein S13 [Bacillus subtilis subsp. subtilis str. 168] | 163 | 2.2e-54
|
| cace | WP_010966388.1 MULTISPECIES: 30S ribosomal protein S13 [Clostridium] | 159 | 1.1e-52
|
| ecoli | NP_417757.1 30S ribosomal subunit protein S13 [Escherichia coli str. K-12 substr. MG1655] | 137 | 3.6e-44
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_S13 | 1 | Ribosomal protein S13/S18 | 3-108 | 107.8 | 4.7e-31
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874546.1| 30S ribosomal protein S13 [Mycoplasma pneumoniae] | 124/124 (100%) | 633 | 2.4e-83
|
| ref|WP_009885860.1| 30S ribosomal protein S13 [Mycoplasma genitalium] | 110/124 (88%) | 576 | 1.3e-74
|
| ref|WP_033160195.1| 30S ribosomal protein S13 [Mycoplasma alvi] | 96/124 (77%) | 525 | 8.9e-67
|
| ref|WP_027124198.1| 30S ribosomal protein S13 [Mycoplasma pirum] | 97/124 (78%) | 519 | 7.9e-66
|
| ref|WP_027120108.1| 30S ribosomal protein S13 [Mycoplasma testudinis] | 93/124 (75%) | 509 | 2.4e-64
|
| ref|WP_011077808.1| 30S ribosomal protein S13 [Mycoplasma penetrans] | 89/124 (71%) | 474 | 5.9e-59
|
| ref|WP_027121764.1| 30S ribosomal protein S13 [Mycoplasma imitans] | 89/124 (71%) | 472 | 8.9e-59
|
| ref|WP_011113889.1| 30S ribosomal protein S13 [Mycoplasma gallisepticum] | 89/124 (71%) | 471 | 1.3e-58
|
| ref|WP_152887766.1| 30S ribosomal protein S13 [Clostridium tarantellae] | 86/120 (71%) | 455 | 3.7e-56
|
| ref|WP_055259971.1| 30S ribosomal protein S13 [Clostridium ventriculi] | 84/120 (70%) | 454 | 5.0e-56
|
Maintained by Jun Ishikawa