General features
| Gene ID | MPN180
|
| Type | CDS
|
| From | 225496
|
| To | 226050
|
| Strand | +
|
| General name | rplF
|
| Definition | ribosomal protein L6
|
| nt length | 555
|
| aa length | 184
|
| m.w. | 20588.94
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE10020 rplF ribosomal protein L6 1322265:1321714 | 174 | 2.0e-57
|
| mgen | WP_010869360.1 50S ribosomal protein L6 [Mycoplasma genitalium] | 278 | 1.1e-98
|
| mpul | WP_010925373.1 50S ribosomal protein L6 [Mycoplasma pulmonis] | 147 | 3.4e-47
|
| mmob | WP_011264770.1 50S ribosomal protein L6 [Mycoplasma mobile] | 145 | 2.0e-46
|
| mmyc | NP_975706.1 50S ribosomal protein L6 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 160 | 4.1e-52
|
| mgal | WP_011113295.1 50S ribosomal protein L6 [Mycoplasma gallisepticum] | 235 | 1.5e-81
|
| uure | WP_012560250.1 50S ribosomal protein L6 [Ureaplasma urealyticum] | 184 | 1.6e-61
|
| phyt | WP_011160590.1 MULTISPECIES: 50S ribosomal protein L6 [Candidatus Phytoplasma asteris] | 142 | 4.7e-45
|
| bsub | NP_388012.1 ribosomal protein L6 (BL8) [Bacillus subtilis subsp. subtilis str. 168] | 142 | 2.3e-44
|
| cace | WP_010966397.1 MULTISPECIES: 50S ribosomal protein L6 [Clostridium] | 155 | 2.2e-49
|
| ecoli | NP_417764.1 50S ribosomal subunit protein L6 [Escherichia coli str. K-12 substr. MG1655] | 139 | 2.3e-43
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_L6 | 2 | Ribosomal protein L6 | 13-85, 93-167 | 116.1 | 8.1e-34
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874537.1| 50S ribosomal protein L6 [Mycoplasma pneumoniae] | 184/184 (100%) | 943 | 1.4e-128
|
| ref|WP_010869360.1| 50S ribosomal protein L6 [Mycoplasma genitalium] | 137/184 (74%) | 711 | 3.6e-93
|
| ref|WP_014893970.1| 50S ribosomal protein L6 [Mycoplasma genitalium] | 137/184 (74%) | 706 | 2.0e-92
|
| ref|WP_027122189.1| 50S ribosomal protein L6 [Mycoplasma imitans] | 119/184 (64%) | 622 | 1.1e-79
|
| ref|WP_011883709.1| 50S ribosomal protein L6 [Mycoplasma gallisepticum] | 117/184 (63%) | 604 | 5.2e-77
|
| ref|WP_011113295.1| 50S ribosomal protein L6 [Mycoplasma gallisepticum] | 116/184 (63%) | 599 | 3.1e-76
|
| ref|WP_151059547.1| 50S ribosomal protein L6 [Mycoplasma gallisepticum] | 116/184 (63%) | 598 | 4.5e-76
|
| ref|WP_014886702.1| 50S ribosomal protein L6 [Mycoplasma gallisepticum] | 115/184 (62%) | 590 | 7.2e-75
|
| ref|WP_027120101.1| 50S ribosomal protein L6 [Mycoplasma testudinis] | 114/184 (61%) | 576 | 1.0e-72
|
| ref|WP_033160189.1| 50S ribosomal protein L6 [Mycoplasma alvi] | 116/184 (63%) | 572 | 4.3e-72
|
Maintained by Jun Ishikawa