General features
| Gene ID | MPN171
|
| Type | CDS
|
| From | 221796
|
| To | 222617
|
| Strand | +
|
| General name | rpsC
|
| Definition | ribosomal protein S3
|
| nt length | 822
|
| aa length | 273
|
| m.w. | 30614.01
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE10090 rpsC ribosomal protein S3 1325729:1324476 | 244 | 1.8e-80
|
| mgen | WP_009885841.1 30S ribosomal protein S3 [Mycoplasma genitalium] | 444 | 1.1e-161
|
| mpul | WP_010925382.1 30S ribosomal protein S3 [Mycoplasma pulmonis] | 164 | 6.6e-52
|
| mmob | WP_011264761.1 30S ribosomal protein S3 [Mycoplasma mobile] | 161 | 9.8e-51
|
| mmyc | NP_975715.1 30S ribosomal protein S3 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 187 | 2.0e-60
|
| mgal | WP_011113286.1 30S ribosomal protein S3 [Mycoplasma gallisepticum] | 310 | 1.9e-108
|
| uure | WP_004026040.1 MULTISPECIES: 30S ribosomal protein S3 [Ureaplasma] | 239 | 1.1e-80
|
| phyt | WP_011160581.1 MULTISPECIES: 30S ribosomal protein S3 [Candidatus Phytoplasma asteris] | 158 | 2.0e-49
|
| bsub | NP_388003.2 ribosomal protein S3 (BS3) [Bacillus subtilis subsp. subtilis str. 168] | 174 | 3.0e-55
|
| cace | WP_010966406.1 MULTISPECIES: 30S ribosomal protein S3 [Clostridium] | 167 | 1.6e-52
|
| ecoli | NP_417773.1 30S ribosomal subunit protein S3 [Escherichia coli str. K-12 substr. MG1655] | 174 | 7.3e-55
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_S3_C | 1 | Ribosomal protein S3, C-terminal domain | 123-205 | 112.7 | 8.9e-33
|
| KH_2 | 1 | KH domain | 39-112 | 52.0 | 4.7e-14
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874528.1| 30S ribosomal protein S3 [Mycoplasma pneumoniae] | 273/273 (100%) | 1439 | 0.0e+00
|
| ref|WP_159203177.1| 30S ribosomal protein S3 [Mycoplasma pneumoniae] | 272/273 (99%) | 1433 | 0.0e+00
|
| ref|WP_014893968.1| 30S ribosomal protein S3 [Mycoplasma genitalium] | 218/269 (81%) | 1147 | 8.7e-157
|
| ref|WP_009885841.1| 30S ribosomal protein S3 [Mycoplasma genitalium] | 217/269 (80%) | 1143 | 3.8e-156
|
| ref|WP_014894410.1| 30S ribosomal protein S3 [Mycoplasma genitalium] | 216/269 (80%) | 1137 | 2.3e-155
|
| ref|WP_027120093.1| 30S ribosomal protein S3 [Mycoplasma testudinis] | 150/259 (57%) | 809 | 3.1e-105
|
| ref|WP_027122181.1| 30S ribosomal protein S3 [Mycoplasma imitans] | 152/242 (62%) | 796 | 1.5e-103
|
| ref|WP_014885806.1| 30S ribosomal protein S3 [Mycoplasma gallisepticum] | 146/233 (62%) | 796 | 1.5e-103
|
| ref|WP_011113286.1| 30S ribosomal protein S3 [Mycoplasma gallisepticum] | 146/233 (62%) | 794 | 4.1e-103
|
| ref|WP_014886316.1| 30S ribosomal protein S3 [Mycoplasma gallisepticum] | 146/233 (62%) | 793 | 4.4e-103
|
Maintained by Jun Ishikawa