General features
| Gene ID | MPN166
|
| Type | CDS
|
| From | 218833
|
| To | 219471
|
| Strand | +
|
| General name | rplD
|
| Definition | ribosomal protein L4
|
| nt length | 639
|
| aa length | 212
|
| m.w. | 23589.42
|
| COG | [-] not in COGs
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE10170 rplD ribosomal protein L4 1330163:1329522 | 166 | 2.0e-53
|
| mgen | WP_009885836.1 50S ribosomal protein L4 [Mycoplasma genitalium] | 246 | 2.9e-85
|
| mpul | WP_010925388.1 50S ribosomal protein L4 [Mycoplasma pulmonis] | 128 | 7.3e-38
|
| mmob | WP_011264756.1 50S ribosomal protein L4 [Mycoplasma mobile] | 129 | 3.1e-38
|
| mmyc | NP_975720.1 50S ribosomal protein L4 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 136 | 5.8e-42
|
| mgal | WP_011113281.1 50S ribosomal protein L4 [Mycoplasma gallisepticum] | 181 | 2.1e-59
|
| uure | WP_004025646.1 50S ribosomal protein L4 [Ureaplasma urealyticum] | 184 | 1.7e-60
|
| phyt | WP_011160576.1 50S ribosomal protein L4 [Onion yellows phytoplasma] | 114 | 1.4e-33
|
| bsub | NP_387998.1 ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. 168] | 134 | 2.2e-40
|
| cace | WP_010966411.1 MULTISPECIES: 50S ribosomal protein L4 [Clostridium] | 102 | 4.3e-28
|
| ecoli | NP_417778.1 50S ribosomal subunit protein L4 [Escherichia coli str. K-12 substr. MG1655] | 95 | 2.1e-25
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_L4 | 1 | Ribosomal protein L4/L1 family | 18-209 | 189.0 | 6.9e-56
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874523.1| 50S ribosomal protein L4 [Mycoplasma pneumoniae] | 212/212 (100%) | 1102 | 7.9e-152
|
| ref|WP_161609380.1| 50S ribosomal protein L4 [Mycoplasma pneumoniae] | 211/212 (99%) | 1096 | 5.1e-151
|
| ref|WP_014325387.1| 50S ribosomal protein L4 [Mycoplasma pneumoniae] | 211/212 (99%) | 1096 | 5.5e-151
|
| ref|WP_014894598.1| 50S ribosomal protein L4 [Mycoplasma genitalium] | 123/212 (58%) | 633 | 1.5e-80
|
| ref|WP_009885836.1| 50S ribosomal protein L4 [Mycoplasma genitalium] | 121/212 (57%) | 628 | 9.7e-80
|
| ref|WP_031489042.1| 50S ribosomal protein L4 [Ureaplasma canigenitalium] | 97/210 (46%) | 471 | 6.5e-56
|
| ref|WP_006689152.1| 50S ribosomal protein L4 [Ureaplasma parvum] | 100/204 (49%) | 466 | 4.0e-55
|
| ref|WP_004025646.1| 50S ribosomal protein L4 [Ureaplasma urealyticum] | 100/204 (49%) | 466 | 4.1e-55
|
| ref|WP_038101563.1| 50S ribosomal protein L4 [Ureaplasma diversum] | 96/204 (47%) | 465 | 5.7e-55
|
| ref|WP_006688823.1| 50S ribosomal protein L4 [Ureaplasma parvum] | 100/204 (49%) | 464 | 8.5e-55
|
Maintained by Jun Ishikawa