General features
| Gene ID | MPN165
|
| Type | CDS
|
| From | 217970
|
| To | 218833
|
| Strand | +
|
| General name | rplC
|
| Definition | ribosomal protein L3
|
| nt length | 864
|
| aa length | 287
|
| m.w. | 31247.10
|
| COG | [-] not in COGs
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE10180 rplC ribosomal protein L3 1331143:1330163 | 241 | 4.8e-80
|
| mgen | WP_010869358.1 50S ribosomal protein L3 [Mycoplasma genitalium] | 387 | 7.7e-139
|
| mpul | WP_010925390.1 50S ribosomal protein L3 [Mycoplasma pulmonis] | 160 | 1.6e-49
|
| mmob | WP_011264755.1 50S ribosomal protein L3 [Mycoplasma mobile] | 144 | 3.1e-43
|
| mmyc | NP_975721.1 50S ribosomal protein L3 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 178 | 7.4e-57
|
| mgal | WP_011113280.1 50S ribosomal protein L3 [Mycoplasma gallisepticum] | 259 | 8.0e-89
|
| uure | WP_004025649.1 50S ribosomal protein L3 [Ureaplasma urealyticum] | 218 | 9.6e-73
|
| bsub | NP_387997.1 ribosomal protein L3 (BL3) [Bacillus subtilis subsp. subtilis str. 168] | 154 | 3.6e-47
|
| cace | WP_010966412.1 MULTISPECIES: 50S ribosomal protein L3 [Clostridium] | 143 | 6.1e-43
|
| ecoli | NP_417779.1 50S ribosomal subunit protein L3 [Escherichia coli str. K-12 substr. MG1655] | 142 | 2.0e-42
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_L3 | 1 | Ribosomal protein L3 | 87-183 | 45.4 | 5.1e-12
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874522.1| 50S ribosomal protein L3 [Mycoplasma pneumoniae] | 287/287 (100%) | 1497 | 0.0e+00
|
| ref|WP_159202078.1| 50S ribosomal protein L3 [Mycoplasma pneumoniae] | 286/287 (99%) | 1492 | 0.0e+00
|
| ref|WP_054173783.1| 50S ribosomal protein L3 [Mycoplasma pneumoniae] | 286/287 (99%) | 1492 | 0.0e+00
|
| ref|WP_161609379.1| 50S ribosomal protein L3 [Mycoplasma pneumoniae] | 286/287 (99%) | 1492 | 0.0e+00
|
| ref|WP_014574901.1| 50S ribosomal protein L3 [Mycoplasma pneumoniae] | 285/287 (99%) | 1485 | 0.0e+00
|
| ref|WP_014325386.1| 50S ribosomal protein L3 [Mycoplasma pneumoniae] | 284/287 (98%) | 1481 | 0.0e+00
|
| ref|WP_159202186.1| 50S ribosomal protein L3, partial [Mycoplasma pneumoniae] | 195/196 (99%) | 1047 | 1.7e-142
|
| ref|WP_010869358.1| 50S ribosomal protein L3 [Mycoplasma genitalium] | 183/241 (75%) | 993 | 2.6e-133
|
| ref|WP_014894184.1| 50S ribosomal protein L3 [Mycoplasma genitalium] | 182/241 (75%) | 991 | 5.7e-133
|
| ref|WP_014894597.1| 50S ribosomal protein L3 [Mycoplasma genitalium] | 182/241 (75%) | 990 | 9.1e-133
|
Maintained by Jun Ishikawa