General features
| Gene ID | MYPE1600
|
| Type | CDS
|
| From | 204575
|
| To | 205024
|
| Strand | +
|
| General name | nusB
|
| Definition | transcription termination factor N-utilization substance protein B
|
| nt length | 450
|
| aa length | 149
|
| m.w. | 17693.60
|
| COG | [K] Transcription
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN030 conserved hypothetical protein 34469:34975 | 37 | 1.7e-05
|
| mgen | WP_009885915.1 DUF1948 domain-containing protein [Mycoplasma genitalium] | 30 | 3.3e-03
|
| mmob | WP_041362751.1 transcription antitermination protein NusB [Mycoplasma mobile] | 41 | 4.5e-07
|
| mmyc | NP_975112.1 transcription termination factor nusB [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 30 | 5.2e-03
|
| mgal | WP_011113758.1 transcription termination factor NusB [Mycoplasma gallisepticum] | 41 | 6.5e-07
|
| uure | WP_004025536.1 transcription antitermination protein NusB [Ureaplasma urealyticum] | 85 | 1.1e-23
|
| phyt | WP_011160793.1 transcription antitermination protein NusB [Onion yellows phytoplasma] | 38 | 4.4e-06
|
| bsub | NP_390312.2 transcription termination factor NusB [Bacillus subtilis subsp. subtilis str. 168] | 35 | 2.2e-04
|
| cace | WP_010965384.1 MULTISPECIES: transcription antitermination factor NusB [Clostridium] | 45 | 1.1e-07
|
| ecoli | NP_414950.1 transcription antitermination protein NusB [Escherichia coli str. K-12 substr. MG1655] | 36 | 1.5e-04
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| NusB | 1 | NusB family | 52-146 | 58.2 | 1e-15
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011076987.1| transcription antitermination protein NusB [Mycoplasma penetrans] | 149/149 (100%) | 752 | 1.2e-100
|
| ref|WP_044891342.1| transcription antitermination protein NusB [Mycoplasma penetrans] | 110/110 (100%) | 552 | 1.3e-70
|
| ref|WP_004025180.1| transcription antitermination protein NusB [Mycoplasma iowae] | 52/127 (40%) | 265 | 9.1e-27
|
| ref|WP_006688871.1| transcription antitermination protein NusB [Ureaplasma parvum] | 49/126 (38%) | 216 | 1.7e-19
|
| ref|WP_004025536.1| transcription antitermination protein NusB [Ureaplasma urealyticum] | 46/126 (36%) | 209 | 2.6e-18
|
| ref|WP_031489005.1| transcription termination factor [Ureaplasma canigenitalium] | 42/125 (33%) | 197 | 1.3e-16
|
| ref|WP_015727247.1| transcription termination factor [Mycoplasma haemofelis] | 43/124 (34%) | 172 | 8.9e-13
|
| ref|WP_027124237.1| DUF1948 domain-containing protein [Mycoplasma pirum] | 44/125 (35%) | 170 | 1.6e-12
|
| ref|WP_076341136.1| transcription antitermination factor NusB [Dubosiella newyorkensis] | 34/132 (25%) | 162 | 2.3e-11
|
| ref|WP_033161798.1| transcription antitermination factor NusB [Sharpea azabuensis] | 43/130 (33%) | 161 | 3.3e-11
|
Maintained by Jun Ishikawa