General features
| Gene ID | MYPE1490
|
| Type | CDS
|
| From | 177800
|
| To | 176640
|
| Strand | -
|
| General name | mucB
|
| Definition | DNA-damage repair protein MucB
|
| nt length | 1161
|
| aa length | 386
|
| m.w. | 44486.68
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN537 mucB UV protection protein MucB 659664:658426 | 102 | 8.2e-26
|
| mgen | WP_010869448.1 DNA polymerase IV [Mycoplasma genitalium] | 117 | 4.6e-31
|
| mpul | WP_041363962.1 DNA polymerase IV [Mycoplasma pulmonis] | 107 | 3.2e-27
|
| mmob | WP_011264795.1 DNA polymerase IV [Mycoplasma mobile] | 121 | 1.4e-32
|
| mmyc | NP_975533.1 DNA polymerase IV [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 137 | 2.4e-38
|
| mgal | WP_011113830.1 DNA polymerase IV [Mycoplasma gallisepticum] | 165 | 9.9e-49
|
| uure | WP_004027185.1 DNA polymerase IV [Ureaplasma urealyticum] | 140 | 5.7e-40
|
| bsub | NP_390268.2 DNA-damage lesion bypass DNA polymerase [Bacillus subtilis subsp. subtilis str. 168] | 166 | 3.1e-48
|
| cace | WP_010963608.1 MULTISPECIES: DNA polymerase IV [Clostridium] | 107 | 6.6e-27
|
| ecoli | NP_414766.1 DNA polymerase IV [Escherichia coli str. K-12 substr. MG1655] | 132 | 4.8e-36
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| IMS | 1 | impB/mucB/samB family | 8-150 | 135.8 | 1.1e-39
|
| IMS_C | 1 | impB/mucB/samB family C-terminal domain | 231-343 | 32.5 | 1.1e-07
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011076976.1| DNA polymerase IV [Mycoplasma penetrans] | 386/386 (100%) | 2033 | 0.0e+00
|
| ref|WP_004025228.1| DNA polymerase IV, partial [Mycoplasma iowae] | 161/378 (42%) | 757 | 4.9e-94
|
| ref|WP_109690566.1| DNA polymerase IV [Tumebacillus permanentifrigoris] | 109/373 (29%) | 481 | 1.0e-52
|
| ref|WP_148630079.1| DNA polymerase IV [Bacillus sp. E214] | 119/373 (31%) | 479 | 3.1e-52
|
| ref|WP_140462044.1| MULTISPECIES: DNA polymerase IV [Bacillaceae] | 119/374 (31%) | 477 | 5.5e-52
|
| ref|WP_153735802.1| DNA polymerase IV [Aquibacillus halophilus] | 111/344 (32%) | 473 | 2.3e-51
|
| ref|WP_163969933.1| DNA polymerase IV [Oceanobacillus sp. YIM 98839] | 109/344 (31%) | 471 | 5.0e-51
|
| ref|WP_114918440.1| DNA polymerase IV [Oceanobacillus sp. 160] | 113/344 (32%) | 465 | 3.0e-50
|
| ref|WP_026570044.1| DNA polymerase IV [Bacillus sp. NSP22.2] | 116/370 (31%) | 463 | 6.0e-50
|
| ref|WP_018708483.1| DNA polymerase IV [Bacillus fordii] | 112/348 (32%) | 462 | 7.1e-50
|
Maintained by Jun Ishikawa