General features
| Gene ID | MYPE1260
|
| Type | CDS
|
| From | 152798
|
| To | 154567
|
| Strand | +
|
| General name | uvrC
|
| Definition | excinuclease ABC subunit C
|
| nt length | 1770
|
| aa length | 589
|
| m.w. | 69270.64
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN125 uvrC excinuclease ABC subunit C 161817:163577 | 360 | 3.2e-119
|
| mgen | WP_010869373.1 excinuclease ABC subunit C [Mycoplasma genitalium] | 343 | 1.8e-112
|
| mpul | WP_010924960.1 GIY-YIG nuclease family protein [Mycoplasma pulmonis] | 220 | 6.8e-66
|
| mmob | WP_011265065.1 excinuclease ABC nuclease subunit C [Mycoplasma mobile] | 227 | 1.4e-68
|
| mmyc | NP_975296.1 excinuclease ABC subunit C [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 286 | 1.2e-90
|
| mgal | WP_011113601.1 excinuclease ABC subunit UvrC [Mycoplasma gallisepticum] | 502 | 4.2e-173
|
| uure | WP_012560321.1 excinuclease ABC subunit UvrC [Ureaplasma urealyticum] | 461 | 1.8e-158
|
| bsub | NP_390727.2 excinuclease ABC (subunit C) [Bacillus subtilis subsp. subtilis str. 168] | 401 | 2.6e-134
|
| cace | WP_010963830.1 MULTISPECIES: excinuclease ABC subunit UvrC [Clostridium] | 309 | 1.9e-98
|
| ecoli | NP_416423.4 excision nuclease subunit C [Escherichia coli str. K-12 substr. MG1655] | 260 | 7.4e-80
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| UvrC_HhH_N | 1 | UvrC Helix-hairpin-helix N-terminal | 374-526 | 164.2 | 2e-48
|
| GIY-YIG | 1 | GIY-YIG catalytic domain | 16-90 | 40.5 | 2.4e-10
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011076954.1| excinuclease ABC subunit UvrC [Mycoplasma penetrans] | 589/589 (100%) | 3028 | 0.0e+00
|
| ref|WP_129374447.1| excinuclease ABC subunit UvrC [Mycoplasma penetrans] | 588/589 (99%) | 3023 | 0.0e+00
|
| ref|WP_081862834.1| excinuclease ABC subunit UvrC [Mycoplasma iowae] | 407/588 (69%) | 2126 | 0.0e+00
|
| ref|WP_040538196.1| excinuclease ABC subunit UvrC [Mycoplasma iowae] | 407/588 (69%) | 2126 | 0.0e+00
|
| ref|WP_027119510.1| excinuclease ABC subunit UvrC [Mycoplasma testudinis] | 287/587 (48%) | 1405 | 0.0e+00
|
| ref|WP_151059714.1| excinuclease ABC subunit UvrC [Mycoplasma gallisepticum] | 272/588 (46%) | 1303 | 2.2e-169
|
| ref|WP_084318494.1| excinuclease ABC subunit UvrC [Mycoplasma imitans] | 270/588 (45%) | 1292 | 5.5e-168
|
| ref|WP_151029789.1| excinuclease ABC subunit UvrC [Mycoplasma gallisepticum] | 270/588 (45%) | 1293 | 5.5e-168
|
| ref|WP_014574627.1| excinuclease ABC subunit UvrC [Mycoplasma gallisepticum] | 270/588 (45%) | 1293 | 6.2e-168
|
| ref|WP_011113601.1| excinuclease ABC subunit UvrC [Mycoplasma gallisepticum] | 271/588 (46%) | 1292 | 8.9e-168
|
Maintained by Jun Ishikawa