General features
| Gene ID | MPN125
|
| Type | CDS
|
| From | 161817
|
| To | 163577
|
| Strand | +
|
| General name | uvrC
|
| Definition | excinuclease ABC subunit C
|
| nt length | 1761
|
| aa length | 586
|
| m.w. | 67752.38
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE1260 uvrC excinuclease ABC subunit C 152798:154567 | 360 | 5.3e-119
|
| mgen | WP_010869373.1 excinuclease ABC subunit C [Mycoplasma genitalium] | 727 | 0.0e+00
|
| mpul | WP_010924960.1 GIY-YIG nuclease family protein [Mycoplasma pulmonis] | 180 | 2.8e-51
|
| mmob | WP_011265065.1 excinuclease ABC nuclease subunit C [Mycoplasma mobile] | 203 | 9.1e-60
|
| mmyc | NP_975296.1 excinuclease ABC subunit C [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 248 | 5.2e-76
|
| mgal | WP_011113601.1 excinuclease ABC subunit UvrC [Mycoplasma gallisepticum] | 379 | 4.0e-125
|
| uure | WP_012560321.1 excinuclease ABC subunit UvrC [Ureaplasma urealyticum] | 315 | 1.1e-101
|
| bsub | NP_390727.2 excinuclease ABC (subunit C) [Bacillus subtilis subsp. subtilis str. 168] | 264 | 1.5e-81
|
| cace | WP_010963830.1 MULTISPECIES: excinuclease ABC subunit UvrC [Clostridium] | 222 | 1.5e-65
|
| ecoli | NP_416423.4 excision nuclease subunit C [Escherichia coli str. K-12 substr. MG1655] | 230 | 1.8e-68
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| UvrC_HhH_N | 1 | UvrC Helix-hairpin-helix N-terminal | 379-531 | 106.1 | 1.6e-30
|
| GIY-YIG | 1 | GIY-YIG catalytic domain | 19-92 | 41.7 | 1.1e-10
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874482.1| excinuclease ABC subunit C [Mycoplasma pneumoniae] | 585/586 (99%) | 3145 | 0.0e+00
|
| ref|WP_014325359.1| excinuclease ABC subunit C [Mycoplasma pneumoniae] | 567/568 (99%) | 3042 | 0.0e+00
|
| ref|WP_161609377.1| excinuclease ABC subunit C [Mycoplasma pneumoniae] | 566/568 (99%) | 3038 | 0.0e+00
|
| ref|WP_159204940.1| excinuclease ABC subunit C [Mycoplasma pneumoniae] | 566/568 (99%) | 3038 | 0.0e+00
|
| ref|WP_161609415.1| excinuclease ABC subunit C [Mycoplasma pneumoniae] | 566/568 (99%) | 3033 | 0.0e+00
|
| ref|WP_159226081.1| excinuclease ABC subunit C [Mycoplasma pneumoniae] | 566/568 (99%) | 3032 | 0.0e+00
|
| ref|WP_010869373.1| excinuclease ABC subunit C [Mycoplasma genitalium] | 350/558 (62%) | 1877 | 0.0e+00
|
| ref|WP_014893994.1| excinuclease ABC subunit C [Mycoplasma genitalium] | 349/558 (62%) | 1872 | 0.0e+00
|
| ref|WP_014894214.1| excinuclease ABC subunit C [Mycoplasma genitalium] | 349/558 (62%) | 1871 | 0.0e+00
|
| ref|WP_027119510.1| excinuclease ABC subunit UvrC [Mycoplasma testudinis] | 214/531 (40%) | 1036 | 3.1e-130
|
Maintained by Jun Ishikawa