General features
| Gene ID | MYPE1190
|
| Type | CDS
|
| From | 145140
|
| To | 146075
|
| Strand | +
|
| General name | nfo
|
| Definition | endonuclease IV
|
| nt length | 936
|
| aa length | 311
|
| m.w. | 35337.47
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN328 nfo endonuclease IV 386734:387594 | 224 | 9.0e-74
|
| mgen | WP_009885772.1 deoxyribonuclease IV [Mycoplasma genitalium] | 211 | 4.5e-69
|
| mpul | WP_010925422.1 deoxyribonuclease IV [Mycoplasma pulmonis] | 205 | 1.8e-66
|
| mmob | WP_011265068.1 deoxyribonuclease IV [Mycoplasma mobile] | 208 | 7.3e-68
|
| mmyc | NP_975115.1 endonuclease IV [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 223 | 3.4e-73
|
| mgal | WP_011113616.1 deoxyribonuclease IV [Mycoplasma gallisepticum] | 246 | 3.4e-82
|
| uure | WP_004025571.1 deoxyribonuclease IV [Ureaplasma urealyticum] | 261 | 5.2e-88
|
| phyt | WP_011160805.1 MULTISPECIES: endonuclease [Candidatus Phytoplasma asteris] | 219 | 7.0e-72
|
| bsub | NP_390392.1 type IV apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp. subtilis str. 168] | 243 | 2.5e-80
|
| cace | WP_010964940.1 MULTISPECIES: TIM barrel protein [Clostridium] | 50 | 3.6e-08
|
| ecoli | NP_416664.1 endonuclease IV [Escherichia coli str. K-12 substr. MG1655] | 158 | 2.0e-47
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| AP_endonuc_2 | 1 | Xylose isomerase-like TIM barrel | 53-265 | 111.2 | 4.5e-32
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_044891192.1| deoxyribonuclease IV [Mycoplasma penetrans] | 289/289 (100%) | 1519 | 0.0e+00
|
| ref|WP_004024939.1| deoxyribonuclease IV [Mycoplasma iowae] | 189/283 (66%) | 1011 | 3.7e-135
|
| ref|WP_036452387.1| deoxyribonuclease IV [Mycoplasma iowae] | 188/283 (66%) | 1007 | 1.6e-134
|
| ref|WP_038103556.1| deoxyribonuclease IV [Ureaplasma diversum] | 153/287 (53%) | 751 | 1.8e-95
|
| ref|WP_084269020.1| deoxyribonuclease IV [Mycoplasma alvi] | 139/274 (50%) | 720 | 4.7e-91
|
| ref|WP_026391268.1| deoxyribonuclease IV [Acholeplasma modicum] | 139/280 (49%) | 716 | 2.9e-90
|
| ref|WP_075884731.1| deoxyribonuclease IV [Faecalibaculum rodentium] | 134/272 (49%) | 708 | 7.1e-89
|
| ref|WP_067556325.1| deoxyribonuclease IV [Faecalibaculum rodentium] | 135/272 (49%) | 708 | 7.6e-89
|
| ref|WP_076341454.1| deoxyribonuclease IV [Dubosiella newyorkensis] | 134/284 (47%) | 704 | 1.1e-88
|
| ref|WP_027119312.1| deoxyribonuclease IV [Mycoplasma testudinis] | 134/282 (47%) | 705 | 1.1e-88
|
Maintained by Jun Ishikawa