General features
| Gene ID | MPN117
|
| Type | CDS
|
| From | 151444
|
| To | 151827
|
| Strand | +
|
| General name | rpLT
|
| Definition | ribosomal protein L20
|
| nt length | 384
|
| aa length | 127
|
| m.w. | 14708.24
|
| COG | [-] not in COGs
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE9150 rpLT ribosomal protein L20 1226698:1226351 | 139 | 3.5e-45
|
| mgen | WP_009885739.1 50S ribosomal protein L20 [Mycoplasma genitalium] | 187 | 1.5e-64
|
| mpul | WP_010925065.1 50S ribosomal protein L20 [Mycoplasma pulmonis] | 134 | 1.4e-43
|
| mmob | WP_011265147.1 50S ribosomal protein L20 [Mycoplasma mobile] | 135 | 5.7e-44
|
| mmyc | NP_975224.1 50S ribosomal protein L20 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 118 | 4.7e-37
|
| mgal | WP_011113605.1 50S ribosomal protein L20 [Mycoplasma gallisepticum] | 166 | 5.5e-56
|
| uure | WP_004025782.1 MULTISPECIES: 50S ribosomal protein L20 [Ureaplasma] | 149 | 1.1e-49
|
| phyt | WP_011161084.1 50S ribosomal protein L20 [Onion yellows phytoplasma] | 91 | 6.6e-26
|
| bsub | NP_390763.1 ribosomal protein L20 [Bacillus subtilis subsp. subtilis str. 168] | 123 | 2.0e-38
|
| cace | WP_010965656.1 MULTISPECIES: 50S ribosomal protein L20 [Clostridium] | 96 | 7.0e-28
|
| ecoli | NP_416231.1 50S ribosomal subunit protein L20 [Escherichia coli str. K-12 substr. MG1655] | 98 | 6.7e-29
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_L20 | 1 | Ribosomal protein L20 | 2-106 | 149.7 | 2.5e-44
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874474.1| 50S ribosomal protein L20 [Mycoplasma pneumoniae] | 127/127 (100%) | 655 | 1.4e-86
|
| ref|WP_054175411.1| 50S ribosomal protein L20 [Mycoplasma pneumoniae] | 127/127 (100%) | 643 | 9.6e-85
|
| ref|WP_054174954.1| 50S ribosomal protein L20 [Mycoplasma pneumoniae] | 124/125 (99%) | 642 | 1.6e-84
|
| ref|WP_014894211.1| 50S ribosomal protein L20 [Mycoplasma genitalium] | 94/121 (77%) | 476 | 2.9e-59
|
| ref|WP_009885739.1| 50S ribosomal protein L20 [Mycoplasma genitalium] | 94/121 (77%) | 474 | 5.0e-59
|
| ref|WP_027123978.1| 50S ribosomal protein L20 [Mycoplasma pirum] | 83/112 (74%) | 435 | 3.2e-53
|
| ref|WP_033159740.1| 50S ribosomal protein L20 [Mycoplasma alvi] | 79/114 (69%) | 431 | 1.4e-52
|
| ref|WP_027121860.1| 50S ribosomal protein L20 [Mycoplasma imitans] | 80/112 (71%) | 423 | 2.7e-51
|
| ref|WP_014574625.1| 50S ribosomal protein L20 [Mycoplasma gallisepticum] | 80/112 (71%) | 420 | 6.2e-51
|
| ref|WP_011113605.1| 50S ribosomal protein L20 [Mycoplasma gallisepticum] | 80/112 (71%) | 419 | 1.2e-50
|
Maintained by Jun Ishikawa