General features
| Gene ID | MYPE1160
|
| Type | CDS
|
| From | 142944
|
| To | 143408
|
| Strand | +
|
| General name | rpsR
|
| Definition | ribosomal protein S18
|
| nt length | 465
|
| aa length | 154
|
| m.w. | 17551.25
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN230 rpsR ribosomal protein S18 280920:281234 | 71 | 9.1e-19
|
| mgen | WP_009885648.1 30S ribosomal protein S18 [Mycoplasma genitalium] | 77 | 6.8e-21
|
| mpul | WP_010925410.1 30S ribosomal protein S18 [Mycoplasma pulmonis] | 56 | 9.2e-13
|
| mmob | WP_041363074.1 30S ribosomal protein S18 [Mycoplasma mobile] | 69 | 2.6e-18
|
| mmyc | NP_975036.1 30S ribosomal protein S18 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 58 | 1.2e-13
|
| mgal | WP_011113872.1 30S ribosomal protein S18 [Mycoplasma gallisepticum] | 78 | 2.4e-21
|
| uure | WP_004025615.1 30S ribosomal protein S18 [Ureaplasma urealyticum] | 88 | 1.5e-25
|
| phyt | WP_011160386.1 MULTISPECIES: 30S ribosomal protein S18 [Candidatus Phytoplasma] | 57 | 1.2e-13
|
| bsub | NP_391969.2 ribosomal protein S18 [Bacillus subtilis subsp. subtilis str. 168] | 58 | 2.8e-13
|
| cace | WP_010966982.1 MULTISPECIES: 30S ribosomal protein S18 [Clostridium] | 67 | 1.1e-16
|
| ecoli | NP_418623.1 30S ribosomal subunit protein S18 [Escherichia coli str. K-12 substr. MG1655] | 62 | 9.4e-15
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_S18 | 1 | Ribosomal protein S18 | 99-149 | 69.7 | 1.7e-19
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011076944.1| 30S ribosomal protein S18 [Mycoplasma penetrans] | 154/154 (100%) | 782 | 5.9e-105
|
| ref|WP_004024838.1| 30S ribosomal protein S18 [Mycoplasma iowae] | 72/139 (51%) | 242 | 3.2e-23
|
| ref|WP_006688517.1| 30S ribosomal protein S18 [Ureaplasma parvum] | 40/67 (59%) | 219 | 2.4e-20
|
| ref|WP_031488921.1| 30S ribosomal protein S18 [Ureaplasma canigenitalium] | 45/74 (60%) | 218 | 2.7e-20
|
| ref|WP_004025615.1| 30S ribosomal protein S18 [Ureaplasma urealyticum] | 40/67 (59%) | 218 | 3.5e-20
|
| ref|WP_038101460.1| 30S ribosomal protein S18 [Ureaplasma diversum] | 44/73 (60%) | 214 | 1.4e-19
|
| ref|WP_036452837.1| 30S ribosomal protein S18 [Mycoplasma buteonis] | 38/67 (56%) | 199 | 2.8e-17
|
| ref|WP_027123900.1| 30S ribosomal protein S18 [Mycoplasma pirum] | 49/105 (46%) | 202 | 3.5e-17
|
| ref|WP_087410249.1| 30S ribosomal protein S18 [Collinsella sp. An2] | 33/64 (51%) | 198 | 3.6e-17
|
| ref|WP_006721901.1| MULTISPECIES: 30S ribosomal protein S18 [Collinsella] | 33/64 (51%) | 198 | 3.9e-17
|
Maintained by Jun Ishikawa