General features
| Gene ID | MYPE1150
|
| Type | CDS
|
| From | 142348
|
| To | 142917
|
| Strand | +
|
| General name | ssb
|
| Definition | single-strand DNA binding protein
|
| nt length | 570
|
| aa length | 189
|
| m.w. | 21421.37
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN229 ssb single-stranded DNA binding protein 280430:280930 | 43 | 3.0e-07
|
| mgen | WP_010869327.1 single-stranded DNA-binding protein [Mycoplasma genitalium] | 47 | 7.5e-09
|
| mpul | WP_010925411.1 single-stranded DNA-binding protein [Mycoplasma pulmonis] | 67 | 7.0e-16
|
| mmob | WP_011264746.1 single-stranded DNA-binding protein [Mycoplasma mobile] | 72 | 8.7e-18
|
| mmyc | NP_975037.1 single-strand binding protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 65 | 1.5e-15
|
| mgal | WP_011113873.1 single-stranded DNA-binding protein [Mycoplasma gallisepticum] | 48 | 4.8e-09
|
| uure | WP_004025516.1 single-stranded DNA-binding protein [Ureaplasma urealyticum] | 93 | 3.5e-26
|
| phyt | WP_011160416.1 MULTISPECIES: single-stranded DNA-binding protein [Candidatus Phytoplasma asteris] | 55 | 3.0e-12
|
| bsub | NP_391970.1 single-strand DNA-binding protein [Bacillus subtilis subsp. subtilis str. 168] | 75 | 1.8e-18
|
| cace | WP_010966983.1 MULTISPECIES: single-stranded DNA-binding protein [Clostridium] | 72 | 1.7e-17
|
| ecoli | NP_418483.1 ssDNA-binding protein [Escherichia coli str. K-12 substr. MG1655] | 59 | 2.8e-12
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| SSB | 1 | Single-strand binding protein family | 1-96 | 86.0 | 1.5e-24
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011076943.1| single-stranded DNA-binding protein [Mycoplasma penetrans] | 189/189 (100%) | 989 | 1.7e-135
|
| ref|WP_004024837.1| single-stranded DNA-binding protein [Mycoplasma iowae] | 101/188 (53%) | 467 | 5.8e-56
|
| ref|WP_027119910.1| single-stranded DNA-binding protein [Mycoplasma testudinis] | 52/122 (42%) | 265 | 1.5e-25
|
| ref|WP_101044367.1| single-stranded DNA-binding protein [Macrococcus caseolyticus] | 50/127 (39%) | 247 | 3.5e-23
|
| ref|WP_072685651.1| single-stranded DNA-binding protein [Holdemania sp. Marseille-P2844] | 51/142 (35%) | 245 | 7.3e-23
|
| ref|WP_143935808.1| single-stranded DNA-binding protein [Staphylococcus sp. NCTC 7486] | 49/127 (38%) | 245 | 8.3e-23
|
| ref|WP_006057561.1| single-stranded DNA-binding protein [Holdemania filiformis] | 49/142 (34%) | 244 | 1.2e-22
|
| ref|WP_101144667.1| single-stranded DNA-binding protein [Macrococcus caseolyticus] | 48/127 (37%) | 241 | 2.8e-22
|
| ref|WP_020224796.1| single-stranded DNA-binding protein [Holdemania massiliensis] | 49/142 (34%) | 240 | 3.9e-22
|
| ref|WP_108774379.1| single-stranded DNA-binding protein [Lactimicrobium massiliense] | 48/128 (37%) | 240 | 5.1e-22
|
Maintained by Jun Ishikawa