General features
| Gene ID | MYPE1140
|
| Type | CDS
|
| From | 141878
|
| To | 142315
|
| Strand | +
|
| General name | rpsF
|
| Definition | ribosomal protein S6
|
| nt length | 438
|
| aa length | 145
|
| m.w. | 17117.81
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN228 rpsF ribosomal protein S6 279783:280430 | 88 | 3.9e-24
|
| mgen | WP_009885647.1 30S ribosomal protein S6 [Mycoplasma genitalium] | 93 | 1.7e-26
|
| mpul | WP_010925412.1 30S ribosomal protein S6 [Mycoplasma pulmonis] | 50 | 4.8e-10
|
| mmob | WP_011264747.1 30S ribosomal protein S6 [Mycoplasma mobile] | 47 | 2.8e-09
|
| mmyc | NP_975038.1 30S ribosomal protein S6 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 51 | 1.7e-10
|
| mgal | WP_011113874.1 30S ribosomal protein S6 [Mycoplasma gallisepticum] | 93 | 1.8e-26
|
| uure | WP_004025588.1 30S ribosomal protein S6 [Ureaplasma urealyticum] | 119 | 7.5e-37
|
| phyt | WP_034172155.1 MULTISPECIES: 30S ribosomal protein S6 [Candidatus Phytoplasma] | 48 | 3.8e-10
|
| bsub | NP_391971.1 ribosomal protein S6 (BS9) [Bacillus subtilis subsp. subtilis str. 168] | 52 | 9.8e-11
|
| cace | WP_010966984.1 MULTISPECIES: 30S ribosomal protein S6 [Clostridium] | 48 | 2.7e-09
|
| ecoli | NP_418621.5 30S ribosomal subunit protein S6 [Escherichia coli str. K-12 substr. MG1655] | 33 | 1.4e-03
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_S6 | 1 | Ribosomal protein S6 | 3-90 | 71.3 | 6.3e-20
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011076942.1| 30S ribosomal protein S6 [Mycoplasma penetrans] | 145/145 (100%) | 743 | 2.0e-99
|
| ref|WP_004024836.1| 30S ribosomal protein S6 [Mycoplasma iowae] | 89/145 (61%) | 477 | 7.1e-59
|
| ref|WP_051749343.1| 30S ribosomal protein S6 [Ureaplasma diversum] | 67/118 (56%) | 314 | 5.3e-34
|
| ref|WP_006688782.1| 30S ribosomal protein S6 [Ureaplasma parvum] | 65/124 (52%) | 307 | 8.7e-33
|
| ref|WP_141918135.1| 30S ribosomal protein S6 [Ureaplasma urealyticum] | 62/121 (51%) | 298 | 1.6e-31
|
| ref|WP_004025588.1| 30S ribosomal protein S6 [Ureaplasma urealyticum] | 62/121 (51%) | 298 | 1.8e-31
|
| ref|WP_031488919.1| 30S ribosomal protein S6 [Ureaplasma canigenitalium] | 60/123 (48%) | 268 | 7.0e-27
|
| ref|WP_013608725.1| 30S ribosomal protein S6 [Mycoplasma suis] | 49/121 (40%) | 256 | 2.1e-25
|
| ref|WP_043896019.1| 30S ribosomal protein S6 [Mycoplasma parvum] | 51/121 (42%) | 249 | 3.0e-24
|
| ref|WP_027121779.1| 30S ribosomal protein S6 [Mycoplasma imitans] | 52/124 (41%) | 238 | 4.5e-22
|
Maintained by Jun Ishikawa