General features
| Gene ID | MYPE1120
|
| Type | CDS
|
| From | 140574
|
| To | 140924
|
| Strand | +
|
| General name |
|
| Definition | ribosome binding factor A
|
| nt length | 351
|
| aa length | 116
|
| m.w. | 13194.33
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN156 rbfA ribosome binding factor A 209560:209910 | 69 | 2.6e-18
|
| mgen | WP_009885829.1 30S ribosome-binding factor RbfA [Mycoplasma genitalium] | 64 | 1.9e-16
|
| mpul | WP_010925473.1 30S ribosome-binding factor RbfA [Mycoplasma pulmonis] | 45 | 5.0e-09
|
| mmob | WP_011264673.1 30S ribosome-binding factor RbfA [Mycoplasma mobile] | 40 | 3.0e-07
|
| mmyc | NP_975333.1 ribosome-binding factor A [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 38 | 4.1e-06
|
| mgal | WP_011113344.1 30S ribosome-binding factor RbfA [Mycoplasma gallisepticum] | 84 | 6.2e-24
|
| uure | WP_004025839.1 30S ribosome-binding factor RbfA [Ureaplasma urealyticum] | 75 | 2.3e-20
|
| phyt | WP_011160526.1 MULTISPECIES: 30S ribosome-binding factor RbfA [Candidatus Phytoplasma asteris] | 30 | 1.2e-03
|
| bsub | NP_389547.1 pre-ribosomal (17S) RNA binding factor A [Bacillus subtilis subsp. subtilis str. 168] | 52 | 6.5e-11
|
| cace | WP_010965109.1 MULTISPECIES: 30S ribosome-binding factor RbfA [Clostridium] | 37 | 2.1e-05
|
| ecoli | NP_417636.1 30S ribosome binding factor [Escherichia coli str. K-12 substr. MG1655] | 46 | 2.2e-08
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| RBFA | 1 | Ribosome-binding factor A | 10-110 | 74.1 | 1.1e-20
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011076940.1| 30S ribosome-binding factor RbfA [Mycoplasma penetrans] | 115/116 (99%) | 579 | 2.3e-75
|
| ref|WP_004024728.1| 30S ribosome-binding factor RbfA [Mycoplasma iowae] | 54/110 (49%) | 269 | 4.3e-28
|
| ref|WP_027124120.1| 30S ribosome-binding factor RbfA [Mycoplasma pirum] | 46/113 (40%) | 216 | 5.2e-20
|
| ref|WP_033160062.1| 30S ribosome-binding factor RbfA [Mycoplasma alvi] | 48/113 (42%) | 210 | 3.5e-19
|
| ref|WP_011113344.1| 30S ribosome-binding factor RbfA [Mycoplasma gallisepticum] | 46/111 (41%) | 207 | 1.3e-18
|
| ref|WP_011883801.1| 30S ribosome-binding factor RbfA [Mycoplasma gallisepticum] | 46/111 (41%) | 206 | 1.5e-18
|
| ref|WP_027122205.1| 30S ribosome-binding factor RbfA [Mycoplasma imitans] | 46/111 (41%) | 205 | 2.7e-18
|
| ref|WP_151029649.1| 30S ribosome-binding factor RbfA [Mycoplasma gallisepticum] | 46/111 (41%) | 205 | 2.9e-18
|
| ref|WP_014574418.1| 30S ribosome-binding factor RbfA [Mycoplasma gallisepticum] | 46/111 (41%) | 204 | 3.6e-18
|
| ref|WP_027119602.1| 30S ribosome-binding factor RbfA [Mycoplasma testudinis] | 43/111 (38%) | 193 | 1.3e-16
|
Maintained by Jun Ishikawa