General features
| Gene ID | MYPE10420
|
| Type | CDS
|
| From | 1358463
|
| To | 1358320
|
| Strand | -
|
| General name | rpmH
|
| Definition | ribosomal protein L34
|
| nt length | 144
|
| aa length | 47
|
| m.w. | 5724.61
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN682 rpmH ribosomal protein L34 805848:805702 | 60 | 9.4e-17
|
| mgen | WP_009885567.1 50S ribosomal protein L34 [Mycoplasma genitalium] | 60 | 1.0e-16
|
| mpul | WP_010924958.1 50S ribosomal protein L34 [Mycoplasma pulmonis] | 56 | 3.9e-15
|
| mmob | WP_011265152.1 50S ribosomal protein L34 [Mycoplasma mobile] | 60 | 1.5e-16
|
| mmyc | NP_976027.3 50S ribosomal protein L34 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 48 | 1.7e-11
|
| mgal | WP_011113236.1 50S ribosomal protein L34 [Mycoplasma gallisepticum] | 66 | 5.6e-19
|
| uure | WP_004026213.1 50S ribosomal protein L34 [Ureaplasma urealyticum] | 62 | 2.2e-17
|
| phyt | WP_011160622.1 MULTISPECIES: 50S ribosomal protein L34 [Candidatus Phytoplasma asteris] | 51 | 5.2e-13
|
| bsub | NP_391986.1 ribosomal protein L34 [Bacillus subtilis subsp. subtilis str. 168] | 51 | 1.6e-12
|
| cace | WP_010966999.1 MULTISPECIES: 50S ribosomal protein L34 [Clostridium] | 38 | 3.6e-07
|
| ecoli | NP_418158.1 50S ribosomal subunit protein L34 [Escherichia coli str. K-12 substr. MG1655] | 41 | 2.6e-08
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_L34 | 1 | Ribosomal protein L34 | 1-44 | 78.5 | 2.7e-22
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077855.1| 50S ribosomal protein L34 [Mycoplasma penetrans] | 47/47 (100%) | 236 | 5.1e-25
|
| ref|WP_004024634.1| 50S ribosomal protein L34 [Mycoplasma iowae] | 37/47 (78%) | 180 | 1.8e-16
|
| ref|WP_109647548.1| 50S ribosomal protein L34 [Gracilimonas sp. 8A47] | 32/47 (68%) | 171 | 4.2e-15
|
| ref|WP_152761002.1| 50S ribosomal protein L34 [Cytophagaceae bacterium SJW1-29] | 32/47 (68%) | 166 | 2.2e-14
|
| ref|WP_090170100.1| 50S ribosomal protein L34 [Lewinella agarilytica] | 32/46 (69%) | 165 | 3.3e-14
|
| ref|WP_104419479.1| 50S ribosomal protein L34 [Lewinella xylanilytica] | 32/46 (69%) | 164 | 5.5e-14
|
| ref|WP_147932298.1| 50S ribosomal protein L34 [Lewinella sp. SSH13] | 33/47 (70%) | 163 | 7.2e-14
|
| ref|WP_099151745.1| 50S ribosomal protein L34 [Lewinella nigricans] | 31/47 (65%) | 163 | 7.3e-14
|
| ref|WP_027122278.1| 50S ribosomal protein L34 [Mycoplasma imitans] | 30/47 (63%) | 162 | 1.0e-13
|
| ref|WP_084269051.1| 50S ribosomal protein L34 [Mycoplasma alvi] | 31/47 (65%) | 162 | 1.0e-13
|
Maintained by Jun Ishikawa