General features

Gene IDMYPE10390
TypeCDS
From1356795
To1355977
Strand-
General nameksgA
Definitionribosomal RNA adenine dimethylase
nt length819
aa length272
m.w.32198.44
COG[J] Translation, ribosomal structure and biogenesis

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN679 ksgA S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase 804225:8034341352.4e-40
mgenWP_010869490.1 ribosomal RNA small subunit methyltransferase A [Mycoplasma genitalium]1425.4e-43
mpulWP_010924819.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA [Mycoplasma pulmonis]1708.8e-54
mmobWP_011265084.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA [Mycoplasma mobile]1642.2e-51
mmycNP_975015.1 dimethyladenosine transferase [Mycoplasma mycoides subsp. mycoides SC str. PG1]1123.2e-31
mgalWP_011113239.1 ribosomal RNA small subunit methyltransferase A [Mycoplasma gallisepticum]1462.2e-44
uureWP_004025835.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA [Ureaplasma urealyticum]1911.5e-61
phytWP_011161073.1 MULTISPECIES: ribosomal RNA small subunit methyltransferase A [Candidatus Phytoplasma asteris]1483.8e-45
bsubNP_387923.1 dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis subsp. subtilis str. 168]1355.4e-39
caceWP_010966268.1 MULTISPECIES: 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA [Clostridium]1474.9e-44
ecoliNP_414593.1 16S rRNA m(6)2A1518,m(6)2A1519 dimethyltransferase [Escherichia coli str. K-12 substr. MG1655]1238.0e-35

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result:



ModelNo.Descrip tionPosition (aa)ScoreE-value

RrnaAD1Ribosomal RNA adenine dimethylase22-265209.54.7e-62

GidB1rRNA small subunit methyltransferase G31-11521.50.00012

BLAST search result (top 10 hits)

ID DescriptionIdentityScoreE-value
ref|WP_011077852.1| ribosomal RNA small subunit methyltransferase A [Mycoplasma penetrans]272/272 (100%)13800.0e+00
ref|WP_129692723.1| ribosomal RNA small subunit methyltransferase A [Mycoplasma iowae]117/258 (45%)5166.0e-61
ref|WP_038102448.1| ribosomal RNA small subunit methyltransferase A [Ureaplasma diversum]112/253 (44%)5028.3e-59
ref|WP_006688630.1| 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase R... [Ureaplasma parv...114/253 (45%)4966.8e-58
ref|WP_142175039.1| 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase R... [Ureaplasma parv...114/253 (45%)4959.7e-58
ref|WP_004024631.1| ribosomal RNA small subunit methyltransferase A [Mycoplasma iowae]112/242 (46%)4902.0e-57
ref|WP_004025835.1| 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase R... [Ureaplasma urea...112/253 (44%)4853.7e-56
ref|WP_027123745.1| ribosomal RNA small subunit methyltransferase A [Mycoplasma pirum]125/258 (48%)4835.0e-56
ref|WP_144234660.1| ribosomal RNA small subunit methyltransferase A [Desulfovibrio marinus...94/250 (37%)4825.6e-56
ref|WP_147821396.1| ribosomal RNA small subunit methyltransferase A [Desulfovibrio sp. IOR...101/238 (42%)4772.8e-55

Maintained by Jun Ishikawa