General features
| Gene ID | MYPE10020
|
| Type | CDS
|
| From | 1322265
|
| To | 1321714
|
| Strand | -
|
| General name | rplF
|
| Definition | ribosomal protein L6
|
| nt length | 552
|
| aa length | 183
|
| m.w. | 19442.55
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN180 rplF ribosomal protein L6 225496:226050 | 174 | 1.2e-57
|
| mgen | WP_010869360.1 50S ribosomal protein L6 [Mycoplasma genitalium] | 166 | 1.5e-54
|
| mpul | WP_010925373.1 50S ribosomal protein L6 [Mycoplasma pulmonis] | 166 | 1.8e-54
|
| mmob | WP_011264770.1 50S ribosomal protein L6 [Mycoplasma mobile] | 158 | 2.9e-51
|
| mmyc | NP_975706.1 50S ribosomal protein L6 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 196 | 4.3e-66
|
| mgal | WP_011113295.1 50S ribosomal protein L6 [Mycoplasma gallisepticum] | 184 | 1.3e-61
|
| uure | WP_012560250.1 50S ribosomal protein L6 [Ureaplasma urealyticum] | 206 | 3.3e-70
|
| phyt | WP_011160590.1 MULTISPECIES: 50S ribosomal protein L6 [Candidatus Phytoplasma asteris] | 152 | 4.1e-49
|
| bsub | NP_388012.1 ribosomal protein L6 (BL8) [Bacillus subtilis subsp. subtilis str. 168] | 150 | 8.5e-48
|
| cace | WP_010966397.1 MULTISPECIES: 50S ribosomal protein L6 [Clostridium] | 153 | 1.1e-48
|
| ecoli | NP_417764.1 50S ribosomal subunit protein L6 [Escherichia coli str. K-12 substr. MG1655] | 154 | 2.8e-49
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_L6 | 2 | Ribosomal protein L6 | 11-82, 91-165 | 105.8 | 1.4e-30
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077816.1| 50S ribosomal protein L6 [Mycoplasma penetrans] | 183/183 (100%) | 930 | 1.4e-126
|
| ref|WP_004024689.1| 50S ribosomal protein L6 [Mycoplasma iowae] | 124/183 (67%) | 636 | 8.2e-82
|
| ref|WP_012560250.1| 50S ribosomal protein L6 [Ureaplasma urealyticum] | 102/182 (56%) | 524 | 7.8e-65
|
| ref|WP_017698330.1| 50S ribosomal protein L6 [Mycoplasma mycoides] | 101/178 (56%) | 501 | 2.4e-61
|
| ref|WP_031489028.1| 50S ribosomal protein L6 [Ureaplasma canigenitalium] | 101/182 (55%) | 501 | 2.6e-61
|
| ref|WP_013729789.1| 50S ribosomal protein L6 [Mycoplasma mycoides] | 101/178 (56%) | 501 | 2.6e-61
|
| ref|WP_129878680.1| 50S ribosomal protein L6 [Mycoplasma mycoides] | 101/178 (56%) | 499 | 4.6e-61
|
| ref|WP_036432211.1| 50S ribosomal protein L6 [Mycoplasma capricolum] | 102/178 (57%) | 499 | 5.0e-61
|
| ref|WP_011166898.1| 50S ribosomal protein L6 [Mycoplasma mycoides] | 100/178 (56%) | 497 | 8.1e-61
|
| ref|WP_008362505.1| 50S ribosomal protein L6 [Mycoplasma feriruminatoris] | 101/178 (56%) | 497 | 8.2e-61
|
Maintained by Jun Ishikawa