General features
| Gene ID | MPN065
|
| Type | CDS
|
| From | 81690
|
| To | 82091
|
| Strand | +
|
| General name | cdd
|
| Definition | cytidine deaminase
|
| nt length | 402
|
| aa length | 133
|
| m.w. | 15185.37
|
| COG | [F] Nucleotide transport and metabolism
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE1060 cdd cytidine deaminase 131342:131764 | 107 | 3.4e-32
|
| mgen | WP_010869308.1 cytidine deaminase [Mycoplasma genitalium] | 192 | 1.9e-66
|
| mmob | WP_011264867.1 cytidine deaminase [Mycoplasma mobile] | 65 | 2.1e-16
|
| mgal | WP_011113840.1 cytidine deaminase [Mycoplasma gallisepticum] | 101 | 3.9e-30
|
| uure | WP_004025572.1 cytidine deaminase [Ureaplasma urealyticum] | 77 | 9.6e-21
|
| bsub | NP_390408.1 cytidine/deoxycytidine deaminase [Bacillus subtilis subsp. subtilis str. 168] | 77 | 2.9e-20
|
| cace | WP_010964852.1 MULTISPECIES: cytidine deaminase [Clostridium] | 81 | 7.3e-22
|
| ecoli | NP_416648.1 cytidine/deoxycytidine deaminase [Escherichia coli str. K-12 substr. MG1655] | 35 | 8.4e-04
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mmob, Mycoplasma mobile; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| dCMP_cyt_deam_1 | 1 | Cytidine and deoxycytidylate deaminase zinc-binding region | 8-104 | 65.5 | 3.2e-18
|
| dCMP_cyt_deam_2 | 1 | Cytidine and deoxycytidylate deaminase zinc-binding region | 14-68 | 23.9 | 3.9e-05
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874422.1| cytidine deaminase [Mycoplasma pneumoniae] | 133/133 (100%) | 719 | 4.1e-96
|
| ref|WP_010869308.1| cytidine deaminase [Mycoplasma genitalium] | 87/129 (67%) | 488 | 6.2e-61
|
| ref|WP_027119402.1| cytidine deaminase [Mycoplasma testudinis] | 52/123 (42%) | 271 | 6.1e-28
|
| ref|WP_129374369.1| cytidine deaminase [Mycoplasma penetrans] | 54/126 (42%) | 263 | 1.4e-26
|
| ref|WP_004025150.1| cytidine deaminase [Mycoplasma iowae] | 57/121 (47%) | 255 | 1.7e-25
|
| ref|WP_124564963.1| cytidine deaminase [Bacillus sp. SYSU K30001] | 57/128 (44%) | 251 | 5.7e-25
|
| ref|WP_011113840.1| cytidine deaminase [Mycoplasma gallisepticum] | 52/124 (41%) | 251 | 8.5e-25
|
| ref|WP_041968067.1| cytidine deaminase [Bacillus selenatarsenatis] | 58/128 (45%) | 250 | 1.1e-24
|
| ref|WP_151059797.1| cytidine deaminase [Mycoplasma gallisepticum] | 52/124 (41%) | 250 | 1.6e-24
|
| ref|WP_027121802.1| cytidine deaminase [Mycoplasma imitans] | 51/122 (41%) | 247 | 2.6e-24
|
Maintained by Jun Ishikawa