General features
| Gene ID | MPN061
|
| Type | CDS
|
| From | 78977
|
| To | 77625
|
| Strand | -
|
| General name | ffh
|
| Definition | signal recognition particle protein
|
| nt length | 1353
|
| aa length | 450
|
| m.w. | 50140.43
|
| COG | [U] Intracellular trafficking, secretion, and vesicular transport
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE2530 ffh signal recognition particle GTPase Ffh 316009:317346 | 489 | 2.4e-173
|
| mgen | WP_081440606.1 signal recognition particle protein [Mycoplasma genitalium] | 715 | 0.0e+00
|
| mpul | WP_010925146.1 signal recognition particle protein [Mycoplasma pulmonis] | 381 | 5.0e-131
|
| mmob | WP_011265047.1 signal recognition particle protein [Mycoplasma mobile] | 372 | 1.7e-127
|
| mmyc | NP_975409.1 signal recognition particle M54 protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 367 | 1.7e-125
|
| mgal | WP_011113531.1 signal recognition particle protein [Mycoplasma gallisepticum] | 524 | 0.0e+00
|
| uure | WP_012560341.1 signal recognition particle protein [Ureaplasma urealyticum] | 508 | 0.0e+00
|
| phyt | WP_041624871.1 signal recognition particle protein [Onion yellows phytoplasma] | 290 | 8.8e-96
|
| bsub | NP_389480.1 signal recognition particle-like (SRP) GTPase [Bacillus subtilis subsp. subtilis str. 168] | 325 | 1.8e-108
|
| cace | WP_010965061.1 MULTISPECIES: signal recognition particle protein [Clostridium] | 312 | 1.9e-103
|
| ecoli | NP_417101.1 signal recognition particle protein component [Escherichia coli str. K-12 substr. MG1655] | 302 | 1.8e-99
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| SRP54 | 1 | SRP54-type protein, GTPase domain | 101-294 | 235.0 | 5.4e-70
|
| SRP_SPB | 1 | Signal peptide binding domain | 326-422 | 83.0 | 1.8e-23
|
| SRP54_N | 1 | SRP54-type protein, helical bundle domain | 15-75 | 51.8 | 7.2e-14
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874418.1| signal recognition particle protein [Mycoplasma pneumoniae] | 450/450 (100%) | 2360 | 0.0e+00
|
| ref|WP_014325315.1| signal recognition particle protein [Mycoplasma pneumoniae] | 449/450 (99%) | 2356 | 0.0e+00
|
| ref|WP_058158329.1| signal recognition particle protein [Mycoplasma pneumoniae] | 449/450 (99%) | 2355 | 0.0e+00
|
| ref|WP_054175897.1| signal recognition particle protein [Mycoplasma pneumoniae] | 448/450 (99%) | 2342 | 0.0e+00
|
| ref|WP_041360871.1| signal recognition particle protein [Mycoplasma genitalium] | 352/443 (79%) | 1908 | 0.0e+00
|
| ref|WP_081440606.1| signal recognition particle protein [Mycoplasma genitalium] | 341/430 (79%) | 1845 | 0.0e+00
|
| ref|WP_027123880.1| signal recognition particle protein [Mycoplasma pirum] | 270/442 (61%) | 1407 | 0.0e+00
|
| ref|WP_033159801.1| signal recognition particle protein [Mycoplasma alvi] | 269/442 (60%) | 1396 | 0.0e+00
|
| ref|WP_027119823.1| signal recognition particle protein [Mycoplasma testudinis] | 269/450 (59%) | 1371 | 0.0e+00
|
| ref|WP_014574681.1| signal recognition particle protein [Mycoplasma gallisepticum] | 263/442 (59%) | 1351 | 0.0e+00
|
Maintained by Jun Ishikawa