General features
| Gene ID | MPN056
|
| Type | CDS
|
| From | 72088
|
| To | 72948
|
| Strand | +
|
| General name | potB
|
| Definition | spermidine/putrescine transport system permease
|
| nt length | 861
|
| aa length | 286
|
| m.w. | 31935.59
|
| COG | [E] Amino acid transport and metabolism
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE8580 potB spermidine/putrescine transport system permease PotB 1155554:1156459 | 137 | 2.5e-40
|
| mgen | WP_010869304.1 ABC transporter permease [Mycoplasma genitalium] | 421 | 6.8e-152
|
| mpul | WP_010925225.1 ABC transporter permease [Mycoplasma pulmonis] | 112 | 7.6e-31
|
| mmob | WP_041362733.1 ABC transporter permease subunit [Mycoplasma mobile] | 108 | 1.3e-29
|
| mmyc | NP_975226.1 spermidine/putrescine ABC transporter permease [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 78 | 3.3e-18
|
| mgal | WP_041594299.1 ABC transporter permease [Mycoplasma gallisepticum] | 195 | 1.9e-62
|
| uure | WP_004026353.1 ABC transporter permease [Ureaplasma urealyticum] | 175 | 1.9e-54
|
| phyt | WP_011161004.1 ABC transporter permease [Onion yellows phytoplasma] | 88 | 2.2e-22
|
| cace | WP_010964157.1 MULTISPECIES: ABC transporter permease [Clostridium] | 88 | 1.5e-21
|
| ecoli | NP_415643.3 spermidine preferential ABC transporter membrane subunit PotB [Escherichia coli str. K-12 substr. MG1655] | 84 | 3.7e-20
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| BPD_transp_1 | 1 | Binding-protein-dependent transport system inner membrane component | 81-270 | 33.3 | 3.8e-08
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874413.1| ABC transporter permease [Mycoplasma pneumoniae] | 286/286 (100%) | 1460 | 0.0e+00
|
| ref|WP_014574856.1| ABC transporter permease [Mycoplasma pneumoniae] | 285/286 (99%) | 1456 | 0.0e+00
|
| ref|WP_161610349.1| ABC transporter permease subunit [Mycoplasma pneumoniae] | 285/286 (99%) | 1455 | 0.0e+00
|
| ref|WP_010869304.1| ABC transporter permease [Mycoplasma genitalium] | 221/283 (78%) | 1082 | 2.3e-146
|
| ref|WP_052663553.1| ABC transporter permease [Mycoplasma testudinis] | 122/276 (44%) | 570 | 3.2e-68
|
| ref|WP_084269056.1| ABC transporter permease [Mycoplasma alvi] | 112/263 (42%) | 543 | 1.0e-64
|
| ref|WP_081794284.1| ABC transporter permease [Mycoplasma pirum] | 117/276 (42%) | 530 | 3.0e-62
|
| ref|WP_031488790.1| ABC transporter permease [Ureaplasma canigenitalium] | 111/284 (39%) | 527 | 1.2e-61
|
| ref|WP_027122091.1| ABC transporter permease [Mycoplasma imitans] | 104/240 (43%) | 518 | 2.0e-60
|
| ref|WP_036447345.1| ABC transporter permease [Mycoplasma gallisepticum] | 105/265 (39%) | 496 | 4.0e-57
|
Maintained by Jun Ishikawa