General features
| Gene ID | MPN045
|
| Type | CDS
|
| From | 53077
|
| To | 54321
|
| Strand | +
|
| General name | hisS
|
| Definition | histidyl-tRNA synthetase
|
| nt length | 1245
|
| aa length | 414
|
| m.w. | 47261.79
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE2860 hisS histidyl-tRNA synthetase 374053:375333 | 257 | 3.6e-83
|
| mgen | WP_009885699.1 histidine--tRNA ligase [Mycoplasma genitalium] | 537 | 0.0e+00
|
| mpul | WP_010925137.1 histidine--tRNA ligase [Mycoplasma pulmonis] | 219 | 4.9e-69
|
| mmob | WP_011264793.1 histidine--tRNA ligase [Mycoplasma mobile] | 230 | 8.6e-73
|
| mmyc | NP_975332.1 histidyl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 223 | 2.5e-70
|
| mgal | WP_011113416.1 histidine--tRNA ligase [Mycoplasma gallisepticum] | 292 | 3.3e-97
|
| uure | WP_004025545.1 histidine--tRNA ligase [Ureaplasma urealyticum] | 247 | 1.5e-79
|
| phyt | WP_011160502.1 MULTISPECIES: histidine--tRNA ligase [Candidatus Phytoplasma asteris] | 214 | 6.1e-67
|
| bsub | NP_390634.1 histidyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] | 244 | 5.8e-78
|
| cace | WP_010966027.1 MULTISPECIES: histidine--tRNA ligase [Clostridium] | 91 | 5.3e-21
|
| ecoli | NP_417009.1 histidine--tRNA ligase [Escherichia coli str. K-12 substr. MG1655] | 214 | 4.8e-66
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| tRNA-synt_His | 1 | Histidyl-tRNA synthetase | 9-305 | 146.4 | 1.1e-42
|
| tRNA-synt_2b | 1 | tRNA synthetase class II core domain (G, H, P, S and T) | 66-311 | 52.2 | 6.9e-14
|
| HGTP_anticodon | 1 | Anticodon binding domain | 365-409 | 25.2 | 1.4e-05
|
| tRNA-synt_2d | 1 | tRNA synthetases class II core domain (F) | 24-136 | 21.4 | 0.00015
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874402.1| histidine--tRNA ligase [Mycoplasma pneumoniae] | 414/414 (100%) | 2189 | 0.0e+00
|
| ref|WP_161609369.1| histidine--tRNA ligase [Mycoplasma pneumoniae] | 413/414 (99%) | 2186 | 0.0e+00
|
| ref|WP_054175898.1| histidine--tRNA ligase [Mycoplasma pneumoniae] | 414/414 (100%) | 2177 | 0.0e+00
|
| ref|WP_014894109.1| histidine--tRNA ligase [Mycoplasma genitalium] | 250/414 (60%) | 1386 | 0.0e+00
|
| ref|WP_009885699.1| histidine--tRNA ligase [Mycoplasma genitalium] | 250/414 (60%) | 1384 | 0.0e+00
|
| ref|WP_014894362.1| histidine--tRNA ligase [Mycoplasma genitalium] | 248/414 (59%) | 1379 | 0.0e+00
|
| ref|WP_033160217.1| histidine--tRNA ligase [Mycoplasma alvi] | 172/397 (43%) | 860 | 1.0e-108
|
| ref|WP_027124251.1| histidine--tRNA ligase [Mycoplasma pirum] | 169/403 (41%) | 819 | 2.0e-102
|
| ref|WP_027119896.1| histidine--tRNA ligase [Mycoplasma testudinis] | 165/401 (41%) | 792 | 1.8e-98
|
| ref|WP_011883943.1| histidine--tRNA ligase [Mycoplasma gallisepticum] | 165/401 (41%) | 750 | 3.4e-92
|
Maintained by Jun Ishikawa