General features
| Gene ID | MPN034
|
| Type | CDS
|
| From | 41131
|
| To | 36800
|
| Strand | -
|
| General name | polC
|
| Definition | DNA polymerase III (dnaE) alpha chain
|
| nt length | 4332
|
| aa length | 1443
|
| m.w. | 165100.65
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE9170 polC DNA polymerase III subunit alpha 1232216:1227840 | 1015 | 0.0e+00
|
| mgen | WP_010869296.1 DNA polymerase III subunit alpha [Mycoplasma genitalium] | 2235 | 0.0e+00
|
| mpul | WP_010925476.1 DNA polymerase III subunit alpha [Mycoplasma pulmonis] | 793 | 0.0e+00
|
| mmob | WP_011264577.1 PolC-type DNA polymerase III [Mycoplasma mobile] | 816 | 0.0e+00
|
| mmyc | NP_975350.1 DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 879 | 0.0e+00
|
| mgal | WP_011113323.1 PolC-type DNA polymerase III [Mycoplasma gallisepticum] | 869 | 0.0e+00
|
| uure | WP_012560277.1 DNA polymerase III subunit alpha [Ureaplasma urealyticum] | 919 | 0.0e+00
|
| phyt | WP_070097669.1 PolC-type DNA polymerase III [Onion yellows phytoplasma] | 703 | 0.0e+00
|
| bsub | NP_389540.1 DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. subtilis str. 168] | 879 | 0.0e+00
|
| cace | WP_010966712.1 MULTISPECIES: DNA polymerase III subunit alpha [Clostridium] | 782 | 0.0e+00
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| DNA_pol3_alpha | 1 | Bacterial DNA polymerase III alpha NTPase domain | 826-1097 | 190.6 | 3.7e-56
|
| RNase_T | 1 | Exonuclease | 409-567 | 120.4 | 1.1e-34
|
| PHP | 1 | PHP domain | 323-679 | 104.7 | 6.3e-30
|
| DNA_pol3_finger | 1 | Bacterial DNA polymerase III alpha subunit finger domain | 1101-1240 | 74.8 | 4.9e-21
|
| HHH_6 | 1 | Helix-hairpin-helix motif | 1354-1436 | 47.2 | 2e-12
|
| RNase_H_2 | 1 | RNase_H superfamily | 409-553 | 30.8 | 2.5e-07
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874391.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 1443/1443 (100%) | 7758 | 0.0e+00
|
| ref|WP_015344863.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 1441/1443 (99%) | 7749 | 0.0e+00
|
| ref|WP_054173240.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 1440/1443 (99%) | 7747 | 0.0e+00
|
| ref|WP_054175763.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 1440/1443 (99%) | 7747 | 0.0e+00
|
| ref|WP_058158328.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 1440/1443 (99%) | 7743 | 0.0e+00
|
| ref|WP_161609412.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 1440/1443 (99%) | 7743 | 0.0e+00
|
| ref|WP_058140978.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 1440/1443 (99%) | 7743 | 0.0e+00
|
| ref|WP_054175405.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 1441/1443 (99%) | 7737 | 0.0e+00
|
| ref|WP_014574846.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 1437/1443 (99%) | 7728 | 0.0e+00
|
| ref|WP_053343993.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 1436/1443 (99%) | 7726 | 0.0e+00
|
Maintained by Jun Ishikawa