General features

Gene IDMPN024
TypeCDS
From29804
To30244
Strand+
General namerpoE
DefinitionDNA-directed RNA polymerase delta subunit
nt length441
aa length146
m.w.17406.16
COG[K] Transcription

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mypeMYPE10350 rpoE DNA-directed RNA polymerase subunit delta 1352425:1351913563.8e-12
mgenWP_009885918.1 DNA-directed RNA polymerase subunit delta [Mycoplasma genitalium]2462.9e-87
mmycNP_975138.1 hypothetical protein MSC_0133 [Mycoplasma mycoides subsp. mycoides SC str. PG1]341.8e-04
mgalWP_011113921.1 DNA-directed RNA polymerase subunit delta [Mycoplasma gallisepticum]812.7e-22
uureWP_004025977.1 DNA-directed RNA polymerase subunit delta [Ureaplasma urealyticum]482.3e-09
phytWP_011160766.1 hypothetical protein [Onion yellows phytoplasma]222.0e+00
bsubNP_391597.1 RNA polymerase (delta subunit) and transcriptional repressor [Bacillus subtilis subsp. subtilis str. 168]361.2e-04

*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis;

Pfam search result:



ModelNo.Descrip tionPosition (aa)ScoreE-value

HARE-HTH1HB1, ASXL, restriction endonuclease HTH domain11-7744.21.9e-11

BLAST search result (top 10 hits)

ID DescriptionIdentityScoreE-value
ref|WP_010874381.1| DNA-directed RNA polymerase subunit delta [Mycoplasma pneumoniae] 146/146 (100%)7553.5e-101
ref|WP_014325291.1| DNA-directed RNA polymerase subunit delta [Mycoplasma pneumoniae]145/146 (99%)7502.2e-100
ref|WP_014574844.1| DNA-directed RNA polymerase subunit delta [Mycoplasma pneumoniae]144/144 (100%)7432.0e-99
ref|WP_009885918.1| DNA-directed RNA polymerase subunit delta [Mycoplasma genitalium]123/144 (85%)6279.8e-82
ref|WP_027119778.1| DNA-directed RNA polymerase subunit delta [Mycoplasma testudinis]65/131 (49%)3222.3e-35
ref|WP_036448540.1| DNA-directed RNA polymerase subunit delta [Mycoplasma pirum]60/130 (46%)2763.0e-28
ref|WP_052664002.1| DNA-directed RNA polymerase subunit delta [Mycoplasma alvi]49/104 (47%)2645.2e-27
ref|WP_027122227.1| DNA-directed RNA polymerase subunit delta [Mycoplasma imitans]37/95 (38%)2067.5e-18
ref|WP_027333331.1| DNA-directed RNA polymerase subunit delta [Mycoplasma gallisepticum]43/123 (34%)2005.6e-17
ref|WP_011113921.1| DNA-directed RNA polymerase subunit delta [Mycoplasma gallisepticum]43/123 (34%)2005.8e-17

Maintained by Jun Ishikawa