General features

Gene IDMPN008
TypeCDS
From9947
To11275
Strand+
General namethdF
Definitionthiophene and furan oxidation protein
nt length1329
aa length442
m.w.49779.45
COG[R] General function prediction only

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mypeMYPE8120 thdF thiophene and furan oxidation protein-related GTPase 1090861:10895272901.9e-95
mgenWP_010869287.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Mycoplasma genitalium]5730.0e+00
mpulWP_010924817.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Mycoplasma pulmonis]2352.3e-74
mmobWP_011265082.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Mycoplasma mobile]2468.2e-79
mmycNP_975095.1 tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. mycoides SC str. PG1]2247.5e-70
mgalWP_011113982.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Mycoplasma gallisepticum]3462.7e-117
uureWP_004025607.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Ureaplasma urealyticum]2641.6e-85
phytWP_011161089.1 MULTISPECIES: tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Candidatus Phytoplasma asteris]1976.7e-60
bsubNP_391982.1 tRNA modification GTPase and tRNA-U34 5-formylation enzyme [Bacillus subtilis subsp. subtilis str. 168]2191.5e-67
ecoliNP_418162.1 5-carboxymethylaminomethyluridine-tRNA synthase GTPase subunit [Escherichia coli str. K-12 substr. MG1655]1973.6e-59

*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;

Pfam search result:



ModelNo.Descrip tionPosition (aa)ScoreE-value

TrmE_N1GTP-binding protein TrmE N-terminus6-121116.86e-34

MnmE_helical1MnmE helical domain124-43997.51.1e-27

MMR_HSR1150S ribosome-binding GTPase219-33284.93.9e-24

FeoB_N1Ferrous iron transport protein B219-33947.31.5e-12

BLAST search result (top 10 hits)

ID DescriptionIdentityScoreE-value
ref|WP_010874365.1| tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Myc...442/442 (100%)23250.0e+00
ref|WP_014325281.1| tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Myc...441/442 (99%)23230.0e+00
ref|WP_054175790.1| tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Myc...441/442 (99%)23200.0e+00
ref|WP_159202491.1| tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Myc...440/442 (99%)23150.0e+00
ref|WP_014894527.1| tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Myc...283/442 (64%)14900.0e+00
ref|WP_010869287.1| tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Myc...282/442 (63%)14780.0e+00
ref|WP_009885977.1| tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, par... [Mycoplasma geni...248/388 (63%)12741.8e-171
ref|WP_098363682.1| tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, par... [Mycoplasma pneu...176/176 (100%)9335.7e-123
ref|WP_081275317.1| tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Myc...193/442 (43%)8963.1e-113
ref|WP_151059881.1| tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Myc...192/442 (43%)8911.8e-112

Maintained by Jun Ishikawa