General features
| Gene ID | MPN005
|
| Type | CDS
|
| From | 7312
|
| To | 8574
|
| Strand | +
|
| General name | serS
|
| Definition | seryl-tRNA synthetase
|
| nt length | 1263
|
| aa length | 420
|
| m.w. | 47923.92
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE4060 serS seryl-tRNA synthetase 531024:532304 | 408 | 4.5e-142
|
| mgen | WP_010869286.1 serine--tRNA ligase [Mycoplasma genitalium] | 697 | 0.0e+00
|
| mpul | WP_010924838.1 serine--tRNA ligase [Mycoplasma pulmonis] | 279 | 5.1e-92
|
| mmob | WP_011264612.1 serine--tRNA ligase [Mycoplasma mobile] | 307 | 4.9e-103
|
| mmyc | NP_975077.1 seryl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 305 | 6.5e-102
|
| mgal | WP_011113985.1 serine--tRNA ligase [Mycoplasma gallisepticum] | 410 | 2.0e-143
|
| uure | WP_004026098.1 serine--tRNA ligase [Ureaplasma urealyticum] | 408 | 1.6e-142
|
| phyt | WP_011160458.1 MULTISPECIES: serine--tRNA ligase [Candidatus Phytoplasma asteris] | 308 | 1.4e-103
|
| bsub | NP_387894.1 seryl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] | 370 | 8.6e-127
|
| cace | WP_010963350.1 MULTISPECIES: serine--tRNA ligase [Clostridium] | 322 | 3.8e-108
|
| ecoli | NP_415413.1 serine--tRNA ligase [Escherichia coli str. K-12 substr. MG1655] | 295 | 1.9e-97
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| tRNA-synt_2b | 1 | tRNA synthetase class II core domain (G, H, P, S and T) | 216-394 | 102.2 | 3e-29
|
| Seryl_tRNA_N | 1 | Seryl-tRNA synthetase N-terminal domain | 1-103 | 66.6 | 2e-18
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874362.1| serine--tRNA ligase [Mycoplasma pneumoniae] | 420/420 (100%) | 2235 | 0.0e+00
|
| ref|WP_014325280.1| serine--tRNA ligase [Mycoplasma pneumoniae] | 418/420 (99%) | 2222 | 0.0e+00
|
| ref|WP_014574839.1| serine--tRNA ligase [Mycoplasma pneumoniae] | 417/420 (99%) | 2218 | 0.0e+00
|
| ref|WP_014894093.1| serine--tRNA ligase [Mycoplasma genitalium] | 331/416 (79%) | 1812 | 0.0e+00
|
| ref|WP_010869286.1| serine--tRNA ligase [Mycoplasma genitalium] | 330/416 (79%) | 1798 | 0.0e+00
|
| ref|WP_027119759.1| serine--tRNA ligase [Mycoplasma testudinis] | 210/416 (50%) | 1115 | 3.8e-147
|
| ref|WP_027123735.1| serine--tRNA ligase [Mycoplasma pirum] | 205/416 (49%) | 1108 | 4.0e-146
|
| ref|WP_033160034.1| serine--tRNA ligase [Mycoplasma alvi] | 207/416 (49%) | 1090 | 2.3e-143
|
| ref|WP_027122268.1| serine--tRNA ligase [Mycoplasma imitans] | 204/412 (49%) | 1075 | 4.6e-141
|
| ref|WP_151059882.1| serine--tRNA ligase [Mycoplasma gallisepticum] | 203/411 (49%) | 1066 | 8.3e-140
|
Maintained by Jun Ishikawa