General features
| Gene ID | MPN003
|
| Type | CDS
|
| From | 2869
|
| To | 4821
|
| Strand | +
|
| General name | gyrB
|
| Definition | DNA gyrase subunit B
|
| nt length | 1953
|
| aa length | 650
|
| m.w. | 73809.15
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE30 gyrB DNA gyrase subunit B 3002:4951 | 891 | 0.0e+00
|
| mgen | WP_009885560.1 DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma genitalium] | 1242 | 0.0e+00
|
| mpul | WP_041364243.1 DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma pulmonis] | 740 | 0.0e+00
|
| mmob | WP_041362766.1 DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma mobile] | 739 | 0.0e+00
|
| mmyc | NP_975017.1 DNA gyrase subunit B [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 671 | 0.0e+00
|
| mgal | WP_011113987.1 DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma gallisepticum] | 900 | 0.0e+00
|
| uure | WP_004025678.1 DNA topoisomerase (ATP-hydrolyzing) subunit B [Ureaplasma urealyticum] | 886 | 0.0e+00
|
| phyt | WP_011160849.1 MULTISPECIES: type IIA DNA topoisomerase subunit B [Candidatus Phytoplasma asteris] | 621 | 0.0e+00
|
| bsub | NP_387887.1 DNA gyrase (subunit B) [Bacillus subtilis subsp. subtilis str. 168] | 702 | 0.0e+00
|
| cace | WP_010963335.1 MULTISPECIES: DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium] | 702 | 0.0e+00
|
| ecoli | YP_026241.1 DNA gyrase subunit B [Escherichia coli str. K-12 substr. MG1655] | 508 | 2.8e-172
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| DNA_gyraseB | 1 | DNA gyrase B | 228-407 | 210.1 | 1.6e-62
|
| DNA_gyraseB_C | 1 | DNA gyrase B subunit, carboxyl terminus | 579-639 | 97.6 | 3.5e-28
|
| HATPase_c | 1 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 37-179 | 72.3 | 4.4e-20
|
| Toprim | 1 | Toprim domain | 436-547 | 67.6 | 9e-19
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874360.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma pneumoniae] | 650/650 (100%) | 3494 | 0.0e+00
|
| ref|WP_159201736.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma pneumoniae] | 649/650 (99%) | 3490 | 0.0e+00
|
| ref|WP_054173306.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma pneumoniae] | 649/650 (99%) | 3489 | 0.0e+00
|
| ref|WP_161609410.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma pneumoniae] | 649/650 (99%) | 3484 | 0.0e+00
|
| ref|WP_054175818.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma pneumoniae] | 650/650 (100%) | 3482 | 0.0e+00
|
| ref|WP_009885560.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma genitalium] | 589/650 (90%) | 3213 | 0.0e+00
|
| ref|WP_027119761.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma testudinis] | 444/649 (68%) | 2461 | 0.0e+00
|
| ref|WP_081794302.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma pirum] | 432/620 (69%) | 2407 | 0.0e+00
|
| ref|WP_084269071.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma alvi] | 427/621 (68%) | 2368 | 0.0e+00
|
| ref|WP_014886312.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma gallisepticu... | 420/647 (64%) | 2326 | 0.0e+00
|
Maintained by Jun Ishikawa