General features
| Gene ID | MPN001
|
| Type | CDS
|
| From | 692
|
| To | 1834
|
| Strand | +
|
| General name | dnaN
|
| Definition | DNA polymerase III beta subunit
|
| nt length | 1143
|
| aa length | 380
|
| m.w. | 43855.83
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE20 dnaN DNA polymerase III subunit beta 1450:2586 | 130 | 8.3e-36
|
| mgen | WP_009885562.1 DNA polymerase III subunit beta [Mycoplasma genitalium] | 550 | 0.0e+00
|
| mpul | WP_010925018.1 hypothetical protein [Mycoplasma pulmonis] | 26 | 1.2e+00
|
| mmob | WP_011264522.1 DNA polymerase III subunit beta [Mycoplasma mobile] | 67 | 5.0e-14
|
| mmyc | NP_975013.1 DNA polymerase III subunit beta [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 68 | 2.3e-14
|
| mgal | WP_011113989.1 DNA polymerase III subunit beta [Mycoplasma gallisepticum] | 83 | 1.9e-19
|
| uure | WP_012560197.1 DNA polymerase III subunit beta [Ureaplasma urealyticum] | 50 | 1.3e-08
|
| phyt | WP_011160377.1 DNA polymerase III subunit beta [Onion yellows phytoplasma] | 47 | 8.5e-08
|
| bsub | NP_387883.1 DNA polymerase III (beta subunit) [Bacillus subtilis subsp. subtilis str. 168] | 93 | 5.2e-22
|
| cace | WP_010963331.1 MULTISPECIES: DNA polymerase III subunit beta [Clostridium] | 55 | 1.4e-09
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| DNA_pol3_beta_3 | 1 | DNA polymerase III beta subunit, C-terminal domain | 259-378 | 61.1 | 8.4e-17
|
| DNA_pol3_beta | 1 | DNA polymerase III beta subunit, N-terminal domain | 1-120 | 52.8 | 3.9e-14
|
| DNA_pol3_beta_2 | 1 | DNA polymerase III beta subunit, central domain | 136-255 | 38.3 | 1.3e-09
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874358.1| DNA polymerase III subunit beta [Mycoplasma pneumoniae] | 380/380 (100%) | 1948 | 0.0e+00
|
| ref|WP_014325278.1| DNA polymerase III subunit beta [Mycoplasma pneumoniae] | 379/380 (99%) | 1941 | 0.0e+00
|
| ref|WP_159201601.1| DNA polymerase III subunit beta [Mycoplasma pneumoniae] | 378/380 (99%) | 1938 | 0.0e+00
|
| ref|WP_014894092.1| DNA polymerase III subunit beta [Mycoplasma genitalium] | 272/380 (71%) | 1427 | 0.0e+00
|
| ref|WP_014893888.1| DNA polymerase III subunit beta [Mycoplasma genitalium] | 271/380 (71%) | 1422 | 0.0e+00
|
| ref|WP_009885562.1| DNA polymerase III subunit beta [Mycoplasma genitalium] | 271/380 (71%) | 1418 | 0.0e+00
|
| ref|WP_027123739.1| DNA polymerase III subunit beta [Mycoplasma pirum] | 123/380 (32%) | 469 | 2.1e-51
|
| ref|WP_027119765.1| DNA polymerase III subunit beta [Mycoplasma testudinis] | 120/380 (31%) | 456 | 2.0e-49
|
| ref|WP_033160039.1| DNA polymerase III subunit beta [Mycoplasma alvi] | 114/380 (30%) | 429 | 2.1e-45
|
| ref|WP_004024804.1| DNA polymerase III subunit beta [Mycoplasma iowae] | 102/378 (26%) | 374 | 1.5e-37
|
Maintained by Jun Ishikawa