General features
| Gene ID | MYPE9150
|
| Type | CDS
|
| From | 1226698
|
| To | 1226351
|
| Strand | -
|
| General name | rpLT
|
| Definition | ribosomal protein L20
|
| nt length | 348
|
| aa length | 115
|
| m.w. | 13796.12
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN117 rpLT ribosomal protein L20 151444:151827 | 139 | 1.9e-45
|
| mgen | WP_009885739.1 50S ribosomal protein L20 [Mycoplasma genitalium] | 133 | 1.9e-43
|
| mpul | WP_010925065.1 50S ribosomal protein L20 [Mycoplasma pulmonis] | 120 | 1.8e-38
|
| mmob | WP_011265147.1 50S ribosomal protein L20 [Mycoplasma mobile] | 127 | 7.1e-41
|
| mmyc | NP_975224.1 50S ribosomal protein L20 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 120 | 5.4e-38
|
| mgal | WP_011113605.1 50S ribosomal protein L20 [Mycoplasma gallisepticum] | 145 | 3.5e-48
|
| uure | WP_004025782.1 MULTISPECIES: 50S ribosomal protein L20 [Ureaplasma] | 153 | 3.3e-51
|
| phyt | WP_011161084.1 50S ribosomal protein L20 [Onion yellows phytoplasma] | 97 | 3.2e-28
|
| bsub | NP_390763.1 ribosomal protein L20 [Bacillus subtilis subsp. subtilis str. 168] | 113 | 1.0e-34
|
| cace | WP_010965656.1 MULTISPECIES: 50S ribosomal protein L20 [Clostridium] | 94 | 2.3e-27
|
| ecoli | NP_416231.1 50S ribosomal subunit protein L20 [Escherichia coli str. K-12 substr. MG1655] | 82 | 9.4e-23
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_L20 | 1 | Ribosomal protein L20 | 2-107 | 151.1 | 9.6e-45
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077734.1| 50S ribosomal protein L20 [Mycoplasma penetrans] | 115/115 (100%) | 599 | 2.2e-78
|
| ref|WP_004025157.1| 50S ribosomal protein L20 [Mycoplasma iowae] | 87/114 (76%) | 467 | 3.1e-58
|
| ref|WP_027123978.1| 50S ribosomal protein L20 [Mycoplasma pirum] | 74/113 (65%) | 399 | 6.1e-48
|
| ref|WP_031489056.1| 50S ribosomal protein L20 [Ureaplasma canigenitalium] | 77/113 (68%) | 390 | 1.8e-46
|
| ref|WP_027119471.1| 50S ribosomal protein L20 [Mycoplasma testudinis] | 69/113 (61%) | 387 | 5.2e-46
|
| ref|WP_004025782.1| MULTISPECIES: 50S ribosomal protein L20 [Ureaplasma] | 74/113 (65%) | 386 | 7.8e-46
|
| ref|WP_006688834.1| 50S ribosomal protein L20 [Ureaplasma parvum] | 74/113 (65%) | 385 | 1.1e-45
|
| ref|WP_038101994.1| 50S ribosomal protein L20 [Ureaplasma diversum] | 76/115 (66%) | 381 | 4.4e-45
|
| ref|WP_027121860.1| 50S ribosomal protein L20 [Mycoplasma imitans] | 71/112 (63%) | 377 | 1.6e-44
|
| ref|WP_014574625.1| 50S ribosomal protein L20 [Mycoplasma gallisepticum] | 70/112 (62%) | 371 | 1.2e-43
|
Maintained by Jun Ishikawa