General features
| Gene ID | MYPE9050
|
| Type | CDS
|
| From | 1216449
|
| To | 1215586
|
| Strand | -
|
| General name |
|
| Definition | ribosme small subunit-dependent GTPase A
|
| nt length | 864
|
| aa length | 287
|
| m.w. | 33341.24
|
| COG | [R] General function prediction only
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN249 yjeQ conserved hypothetical protein 300255:301091 | 128 | 4.9e-37
|
| mgen | WP_010869335.1 ribosome small subunit-dependent GTPase A [Mycoplasma genitalium] | 130 | 5.7e-38
|
| mpul | WP_010925485.1 ribosome small subunit-dependent GTPase A [Mycoplasma pulmonis] | 175 | 3.2e-55
|
| mmob | WP_041362975.1 ribosome small subunit-dependent GTPase A [Mycoplasma mobile] | 196 | 1.4e-63
|
| mmyc | NP_975305.1 hypothetical protein MSC_0306 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 145 | 2.3e-43
|
| mgal | WP_011113897.1 ribosome small subunit-dependent GTPase A [Mycoplasma gallisepticum] | 148 | 6.9e-45
|
| uure | WP_004025802.1 ribosome small subunit-dependent GTPase A [Ureaplasma urealyticum] | 251 | 1.3e-84
|
| phyt | WP_011160557.1 MULTISPECIES: ribosome small subunit-dependent GTPase [Candidatus Phytoplasma asteris] | 172 | 9.6e-54
|
| bsub | NP_389460.1 GTPase involved in ribosome biogenesis [Bacillus subtilis subsp. subtilis str. 168] | 179 | 8.3e-56
|
| cace | WP_010965036.1 ribosome small subunit-dependent GTPase A [Clostridium acetobutylicum] | 145 | 5.4e-43
|
| ecoli | NP_418585.4 ribosome small subunit-dependent GTPase A [Escherichia coli str. K-12 substr. MG1655] | 114 | 1.1e-30
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| RsgA_GTPase | 1 | RsgA GTPase | 60-225 | 189.3 | 4.5e-56
|
| MMR_HSR1 | 1 | 50S ribosome-binding GTPase | 162-241 | 30.7 | 2.5e-07
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077725.1| ribosome small subunit-dependent GTPase A [Mycoplasma penetrans] | 287/287 (100%) | 1493 | 0.0e+00
|
| ref|WP_004025198.1| ribosome small subunit-dependent GTPase A [Mycoplasma iowae] | 149/286 (52%) | 694 | 3.2e-87
|
| ref|WP_088437613.1| ribosome small subunit-dependent GTPase A [Ureaplasma parvum] | 143/285 (50%) | 662 | 1.9e-82
|
| ref|WP_006688949.1| ribosome small subunit-dependent GTPase A [Ureaplasma parvum] | 143/285 (50%) | 662 | 1.9e-82
|
| ref|WP_004025802.1| ribosome small subunit-dependent GTPase A [Ureaplasma urealyticum] | 134/285 (47%) | 641 | 3.2e-79
|
| ref|WP_004026834.1| ribosome small subunit-dependent GTPase A [Ureaplasma urealyticum] | 133/285 (46%) | 639 | 5.8e-79
|
| ref|WP_081847816.1| ribosome small subunit-dependent GTPase A [Ureaplasma diversum] | 135/281 (48%) | 637 | 1.5e-78
|
| ref|WP_114352752.1| ribosome small subunit-dependent GTPase A [Saliterribacillus persicus] | 123/277 (44%) | 537 | 1.1e-63
|
| ref|WP_073201837.1| ribosome small subunit-dependent GTPase A [Gracilibacillus kekensis] | 115/265 (43%) | 537 | 1.4e-63
|
| ref|WP_018932717.1| ribosome small subunit-dependent GTPase A [Gracilibacillus lacisalsi] | 117/258 (45%) | 533 | 5.3e-63
|
Maintained by Jun Ishikawa