General features
| Gene ID | MYPE2790
|
| Type | CDS
|
| From | 367005
|
| To | 366346
|
| Strand | -
|
| General name | ruvA
|
| Definition | holliday junction DNA helicase RuvA
|
| nt length | 660
|
| aa length | 219
|
| m.w. | 25017.31
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN535 ruvA Holliday junction DNA helicase RuvA 656922:657542 | 71 | 5.0e-17
|
| mgen | WP_010869447.1 Holliday junction branch migration protein RuvA [Mycoplasma genitalium] | 81 | 6.0e-21
|
| mpul | WP_010925458.1 Holliday junction branch migration protein RuvA [Mycoplasma pulmonis] | 82 | 3.7e-21
|
| mmob | WP_011264790.1 Holliday junction branch migration protein RuvA [Mycoplasma mobile] | 93 | 2.3e-25
|
| mmyc | NP_975526.1 Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 60 | 6.9e-13
|
| mgal | WP_011113863.1 Holliday junction branch migration protein RuvA [Mycoplasma gallisepticum] | 70 | 2.4e-16
|
| uure | WP_004025753.1 Holliday junction DNA helicase RuvA [Ureaplasma urealyticum] | 93 | 2.1e-25
|
| bsub | NP_390652.1 Holliday junction DNA helicase [Bacillus subtilis subsp. subtilis str. 168] | 101 | 7.6e-28
|
| cace | WP_010965583.1 MULTISPECIES: Holliday junction branch migration protein RuvA [Clostridium] | 74 | 1.5e-17
|
| ecoli | NP_416375.1 Holliday junction branch migration complex subunit RuvA [Escherichia coli str. K-12 substr. MG1655] | 52 | 1.5e-09
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| RuvA_C | 1 | RuvA, C-terminal domain | 160-208 | 40.2 | 3.4e-10
|
| HHH_5 | 1 | Helix-hairpin-helix domain | 74-129 | 38.9 | 9.5e-10
|
| RuvA_N | 1 | RuvA N terminal domain | 1-50 | 38.4 | 9.5e-10
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077107.1| Holliday junction branch migration protein RuvA [Mycoplasma penetrans] | 219/219 (100%) | 1100 | 2.4e-151
|
| ref|WP_129374494.1| Holliday junction branch migration protein RuvA [Mycoplasma penetrans] | 218/219 (99%) | 1096 | 1.0e-150
|
| ref|WP_004024885.1| Holliday junction branch migration protein RuvA [Mycoplasma iowae] | 102/206 (49%) | 442 | 1.9e-51
|
| ref|WP_051790222.1| Holliday junction branch migration protein RuvA [Mycoplasma iowae] | 101/206 (49%) | 437 | 1.0e-50
|
| ref|WP_023177217.1| Holliday junction branch migration protein RuvA [Carnobacterium inhibe... | 71/207 (34%) | 264 | 7.6e-25
|
| ref|WP_131598519.1| Holliday junction branch migration protein RuvA [Mycoplasma marinum] | 74/210 (35%) | 263 | 1.1e-24
|
| ref|WP_089978323.1| Holliday junction branch migration protein RuvA [Carnobacterium virida... | 72/207 (34%) | 262 | 1.7e-24
|
| ref|WP_027334014.1| Holliday junction branch migration protein RuvA [Mycoplasma elephantis... | 70/216 (32%) | 261 | 2.0e-24
|
| ref|WP_035021926.1| Holliday junction branch migration protein RuvA [Carnobacterium sp. WN... | 71/207 (34%) | 257 | 8.0e-24
|
| ref|WP_019259053.1| Holliday junction branch migration protein RuvA [Bacillus subtilis] | 69/195 (35%) | 255 | 1.6e-23
|
Maintained by Jun Ishikawa