General features
| Gene ID | MPN624
|
| Type | CDS
|
| From | 751224
|
| To | 751421
|
| Strand | +
|
| General name | rpmB
|
| Definition | ribosomal protein L28
|
| nt length | 198
|
| aa length | 65
|
| m.w. | 7530.79
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE4030 rpL28 ribosomal protein L28 528762:528514 | 54 | 2.0e-13
|
| mgen | WP_009885606.1 50S ribosomal protein L28 [Mycoplasma genitalium] | 112 | 5.4e-37
|
| mpul | WP_010925497.1 50S ribosomal protein L28 [Mycoplasma pulmonis] | 59 | 1.5e-15
|
| mmob | WP_011264935.1 50S ribosomal protein L28 [Mycoplasma mobile] | 59 | 8.0e-16
|
| mmyc | NP_975469.3 50S ribosomal protein L28 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 63 | 3.8e-17
|
| mgal | WP_011113782.1 50S ribosomal protein L28 [Mycoplasma gallisepticum] | 69 | 1.4e-19
|
| uure | WP_004027297.1 50S ribosomal protein L28 [Ureaplasma urealyticum] | 77 | 1.4e-22
|
| phyt | WP_011160481.1 MULTISPECIES: 50S ribosomal protein L28 [Candidatus Phytoplasma] | 46 | 1.4e-10
|
| bsub | NP_389464.1 ribosomal protein L28 [Bacillus subtilis subsp. subtilis str. 168] | 41 | 4.0e-08
|
| cace | WP_010965040.1 MULTISPECIES: 50S ribosomal protein L28 [Clostridium] | 30 | 2.3e-03
|
| ecoli | NP_418094.1 50S ribosomal subunit protein L28 [Escherichia coli str. K-12 substr. MG1655] | 30 | 2.4e-03
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_L28 | 1 | Ribosomal L28 family | 3-60 | 59.7 | 2.4e-16
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874981.1| 50S ribosomal protein L28 [Mycoplasma pneumoniae] | 65/65 (100%) | 328 | 1.2e-38
|
| ref|WP_009885606.1| 50S ribosomal protein L28 [Mycoplasma genitalium] | 54/64 (84%) | 281 | 1.8e-31
|
| ref|WP_033159928.1| 50S ribosomal protein L28 [Mycoplasma alvi] | 40/65 (61%) | 213 | 4.9e-21
|
| ref|WP_027123712.1| 50S ribosomal protein L28 [Mycoplasma pirum] | 38/65 (58%) | 203 | 1.7e-19
|
| ref|WP_027119578.1| 50S ribosomal protein L28 [Mycoplasma testudinis] | 38/65 (58%) | 201 | 3.9e-19
|
| ref|WP_004026215.1| MULTISPECIES: 50S ribosomal protein L28 [Ureaplasma] | 38/65 (58%) | 191 | 1.1e-17
|
| ref|WP_038103464.1| 50S ribosomal protein L28 [Ureaplasma diversum] | 38/65 (58%) | 189 | 2.2e-17
|
| ref|WP_031489079.1| 50S ribosomal protein L28 [Ureaplasma canigenitalium] | 37/65 (56%) | 189 | 2.4e-17
|
| ref|WP_156006975.1| 50S ribosomal protein L28 [Spiroplasma tabanidicola] | 38/65 (58%) | 189 | 2.5e-17
|
| ref|WP_004027297.1| 50S ribosomal protein L28 [Ureaplasma urealyticum] | 37/65 (56%) | 188 | 3.3e-17
|
Maintained by Jun Ishikawa