General features
| Gene ID | MPN328
|
| Type | CDS
|
| From | 386734
|
| To | 387594
|
| Strand | +
|
| General name | nfo
|
| Definition | endonuclease IV
|
| nt length | 861
|
| aa length | 286
|
| m.w. | 31889.63
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE1190 nfo endonuclease IV 145140:146075 | 224 | 1.4e-73
|
| mgen | WP_009885772.1 deoxyribonuclease IV [Mycoplasma genitalium] | 404 | 2.7e-145
|
| mpul | WP_010925422.1 deoxyribonuclease IV [Mycoplasma pulmonis] | 198 | 3.6e-64
|
| mmob | WP_011265068.1 deoxyribonuclease IV [Mycoplasma mobile] | 207 | 9.5e-68
|
| mmyc | NP_975115.1 endonuclease IV [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 224 | 3.2e-74
|
| mgal | WP_011113616.1 deoxyribonuclease IV [Mycoplasma gallisepticum] | 238 | 1.7e-79
|
| uure | WP_004025571.1 deoxyribonuclease IV [Ureaplasma urealyticum] | 233 | 1.3e-77
|
| phyt | WP_011160805.1 MULTISPECIES: endonuclease [Candidatus Phytoplasma asteris] | 210 | 9.3e-69
|
| bsub | NP_390392.1 type IV apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp. subtilis str. 168] | 204 | 1.6e-65
|
| cace | WP_010964940.1 MULTISPECIES: TIM barrel protein [Clostridium] | 41 | 2.9e-05
|
| ecoli | NP_416664.1 endonuclease IV [Escherichia coli str. K-12 substr. MG1655] | 135 | 7.2e-39
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| AP_endonuc_2 | 1 | Xylose isomerase-like TIM barrel | 23-238 | 114.8 | 3.7e-33
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874684.1| deoxyribonuclease IV [Mycoplasma pneumoniae] | 286/286 (100%) | 1536 | 0.0e+00
|
| ref|WP_017532906.1| deoxyribonuclease IV [Mycoplasma pneumoniae] | 285/286 (99%) | 1533 | 0.0e+00
|
| ref|WP_054175916.1| deoxyribonuclease IV [Mycoplasma pneumoniae] | 285/286 (99%) | 1531 | 0.0e+00
|
| ref|WP_086132696.1| deoxyribonuclease IV [Mycoplasma pneumoniae] | 285/286 (99%) | 1530 | 0.0e+00
|
| ref|WP_054175519.1| deoxyribonuclease IV [Mycoplasma pneumoniae] | 284/286 (99%) | 1512 | 0.0e+00
|
| ref|WP_009885772.1| deoxyribonuclease IV [Mycoplasma genitalium] | 187/283 (66%) | 1039 | 8.9e-140
|
| ref|WP_036448676.1| deoxyribonuclease IV [Mycoplasma pirum] | 130/258 (50%) | 714 | 1.4e-90
|
| ref|WP_027119312.1| deoxyribonuclease IV [Mycoplasma testudinis] | 127/277 (45%) | 682 | 1.2e-85
|
| ref|WP_084269020.1| deoxyribonuclease IV [Mycoplasma alvi] | 127/280 (45%) | 667 | 1.8e-83
|
| ref|WP_154516504.1| deoxyribonuclease IV [Sharpea azabuensis] | 122/280 (43%) | 638 | 6.9e-79
|
Maintained by Jun Ishikawa