General features
| Gene ID | MYPE9740
|
| Type | CDS
|
| From | 1296154
|
| To | 1295429
|
| Strand | -
|
| General name | hisT
|
| Definition | tRNA pseudouridine synthase
|
| nt length | 726
|
| aa length | 241
|
| m.w. | 28315.54
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN196 hisT pseudouridylate synthase I 235805:236536 | 171 | 1.5e-54
|
| mgen | WP_009885867.1 tRNA pseudouridine(38-40) synthase TruA [Mycoplasma genitalium] | 179 | 4.2e-58
|
| mmyc | NP_975692.1 tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 96 | 1.0e-25
|
| mgal | WP_011113833.1 tRNA pseudouridine(38-40) synthase TruA [Mycoplasma gallisepticum] | 165 | 4.2e-52
|
| uure | WP_004025904.1 tRNA pseudouridine(38-40) synthase TruA [Ureaplasma urealyticum] | 194 | 1.4e-63
|
| phyt | WP_011160604.1 MULTISPECIES: tRNA pseudouridine(38-40) synthase TruA [Candidatus Phytoplasma asteris] | 109 | 5.5e-31
|
| bsub | NP_388029.2 tRNA pseudouridine (38-40) synthase [Bacillus subtilis subsp. subtilis str. 168] | 135 | 3.6e-40
|
| cace | WP_010966380.1 MULTISPECIES: tRNA pseudouridine(38-40) synthase TruA [Clostridium] | 139 | 8.2e-42
|
| ecoli | NP_416821.1 tRNA pseudouridine(38-40) synthase [Escherichia coli str. K-12 substr. MG1655] | 99 | 5.0e-26
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| PseudoU_synth_1 | 2 | tRNA pseudouridine synthase | 9-103, 143-241 | 86.5 | 1.5e-24
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077789.1| tRNA pseudouridine(38-40) synthase TruA [Mycoplasma penetrans] | 241/241 (100%) | 1254 | 3.7e-174
|
| ref|WP_036452082.1| tRNA pseudouridine(38-40) synthase TruA [Mycoplasma iowae] | 122/240 (50%) | 591 | 3.4e-73
|
| ref|WP_004025353.1| tRNA pseudouridine(38-40) synthase TruA [Mycoplasma iowae] | 121/240 (50%) | 586 | 1.7e-72
|
| ref|WP_006689087.1| tRNA pseudouridine(38-40) synthase TruA [Ureaplasma parvum] | 110/241 (45%) | 495 | 1.1e-58
|
| ref|WP_045470373.1| tRNA pseudouridine(38-40) synthase TruA [Ureaplasma parvum] | 110/241 (45%) | 494 | 1.7e-58
|
| ref|WP_004025904.1| tRNA pseudouridine(38-40) synthase TruA [Ureaplasma urealyticum] | 107/241 (44%) | 492 | 3.3e-58
|
| ref|WP_006688760.1| tRNA pseudouridine(38-40) synthase TruA [Ureaplasma parvum] | 109/241 (45%) | 491 | 3.7e-58
|
| ref|WP_088444137.1| tRNA pseudouridine(38-40) synthase TruA [Ureaplasma parvum] | 108/241 (44%) | 483 | 7.7e-57
|
| ref|WP_031489070.1| tRNA pseudouridine(38-40) synthase TruA [Ureaplasma canigenitalium] | 106/241 (43%) | 470 | 6.0e-55
|
| ref|WP_084266139.1| tRNA pseudouridine(38-40) synthase TruA [Mycoplasma testudinis] | 99/235 (42%) | 458 | 7.3e-53
|
Maintained by Jun Ishikawa