General features
| Gene ID | MYPE8360
|
| Type | CDS
|
| From | 1113399
|
| To | 1112116
|
| Strand | -
|
| General name |
|
| Definition | RNA polymerase sigma factor, contains similarity to Pfam domain Sigma-70
|
| nt length | 1284
|
| aa length | 427
|
| m.w. | 49143.76
|
| COG | [K] Transcription
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN352 sigA Sigma-70 Factor Family 420240:418741 | 386 | 1.3e-132
|
| mgen | WP_009885787.1 RNA polymerase sigma factor [Mycoplasma genitalium] | 391 | 6.4e-135
|
| mpul | WP_041364105.1 RNA polymerase sigma factor [Mycoplasma pulmonis] | 214 | 9.5e-67
|
| mmob | WP_011264809.1 RNA polymerase sigma factor [Mycoplasma mobile] | 259 | 1.6e-83
|
| mmyc | NP_975452.1 RNA polymerase sigma-A factor [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 282 | 8.4e-92
|
| mgal | WP_011113635.1 RNA polymerase sigma factor [Mycoplasma gallisepticum] | 437 | 1.8e-150
|
| uure | WP_004025598.1 RNA polymerase sigma factor [Ureaplasma urealyticum] | 394 | 1.1e-136
|
| phyt | WP_011160779.1 DNA-directed RNA polymerase sigma-70 factor [Onion yellows phytoplasma] | 45 | 2.8e-07
|
| bsub | NP_389416.1 RNA polymerase sporulation-specific sigma factor (sigma-G) [Bacillus subtilis subsp. subtilis str. 168] | 84 | 1.4e-19
|
| cace | WP_010964612.1 MULTISPECIES: RNA polymerase sigma factor RpoD [Clostridium] | 252 | 2.1e-81
|
| ecoli | NP_417539.1 RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli str. K-12 substr. MG1655] | 259 | 3.8e-81
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Sigma70_r3 | 1 | Sigma-70 region 3 | 262-342 | 74.7 | 4.5e-21
|
| Sigma70_r2 | 1 | Sigma-70 region 2 | 183-252 | 74.2 | 5.1e-21
|
| Sigma70_r4 | 1 | Sigma-70, region 4 | 361-411 | 62.7 | 1.7e-17
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077657.1| RNA polymerase sigma factor [Mycoplasma penetrans] | 427/427 (100%) | 2235 | 0.0e+00
|
| ref|WP_129374525.1| RNA polymerase sigma factor [Mycoplasma penetrans] | 425/427 (99%) | 2223 | 0.0e+00
|
| ref|WP_004024914.1| RNA polymerase sigma factor [Mycoplasma iowae] | 326/412 (79%) | 1681 | 0.0e+00
|
| ref|WP_036451599.1| RNA polymerase sigma factor [Mycoplasma iowae] | 325/412 (78%) | 1678 | 0.0e+00
|
| ref|WP_129692534.1| RNA polymerase sigma factor [Mycoplasma iowae] | 325/412 (78%) | 1671 | 0.0e+00
|
| ref|WP_052663082.1| RNA polymerase sigma factor [Mycoplasma pirum] | 238/402 (59%) | 1145 | 7.7e-150
|
| ref|WP_027121895.1| RNA polymerase sigma factor [Mycoplasma imitans] | 227/399 (56%) | 1133 | 1.6e-146
|
| ref|WP_065165728.1| RNA polymerase sigma factor [Mycoplasma gallisepticum] | 228/399 (57%) | 1127 | 9.1e-146
|
| ref|WP_023893676.1| RNA polymerase sigma factor [Mycoplasma gallisepticum] | 228/399 (57%) | 1127 | 1.0e-145
|
| ref|WP_014574596.1| RNA polymerase sigma factor [Mycoplasma gallisepticum] | 228/399 (57%) | 1125 | 1.8e-145
|
Maintained by Jun Ishikawa