General features

Gene IDMYPE8120
TypeCDS
From1090861
To1089527
Strand-
General namethdF
Definitionthiophene and furan oxidation protein-related GTPase
nt length1335
aa length444
m.w.49726.29
COG[R] General function prediction only

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN008 thdF thiophene and furan oxidation protein 9947:112753001.2e-99
mgenWP_010869287.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Mycoplasma genitalium]2892.0e-95
mpulWP_010924817.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Mycoplasma pulmonis]2914.2e-96
mmobWP_011265082.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Mycoplasma mobile]3161.0e-105
mmycNP_975095.1 tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. mycoides SC str. PG1]2953.8e-97
mgalWP_011113982.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Mycoplasma gallisepticum]3031.2e-100
caceWP_010966994.1 MULTISPECIES: tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Clostridium]2957.5e-97
ecoliNP_418162.1 5-carboxymethylaminomethyluridine-tRNA synthase GTPase subunit [Escherichia coli str. K-12 substr. MG1655]2496.0e-79

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result:



ModelNo.Descrip tionPosition (aa)ScoreE-value

TrmE_N1GTP-binding protein TrmE N-terminus4-118129.66.7e-38

MnmE_helical1MnmE helical domain121-441102.82.7e-29

MMR_HSR1150S ribosome-binding GTPase217-33095.12.8e-27

AIG11AIG1 family216-32135.65.6e-09

FeoB_N1Ferrous iron transport protein B217-35431.61e-07

Ras1Ras family218-33527.81.6e-06

BLAST search result (top 10 hits)

ID DescriptionIdentityScoreE-value
ref|WP_011077634.1| tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Myc...444/444 (100%)22050.0e+00
ref|WP_004025113.1| tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Myc...222/444 (50%)10961.4e-143
ref|WP_117813788.1| MULTISPECIES: tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GT... [unclassified Co...191/443 (43%)9241.5e-117
ref|WP_117782956.1| MULTISPECIES: tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GT... [unclassified Co...191/443 (43%)9222.2e-117
ref|WP_117347736.1| tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Clo...190/443 (42%)9213.6e-117
ref|WP_118470413.1| tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Cop...190/443 (42%)9213.6e-117
ref|WP_117787757.1| MULTISPECIES: tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GT... [unclassified Co...191/443 (43%)9204.5e-117
ref|WP_118487733.1| tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Cop...190/443 (42%)9204.5e-117
ref|WP_118661660.1| MULTISPECIES: tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GT... [unclassified Co...189/443 (42%)9189.1e-117
ref|WP_117809876.1| MULTISPECIES: tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GT... [unclassified Co...191/443 (43%)9153.2e-116

Maintained by Jun Ishikawa