General features
| Gene ID | MPN536
|
| Type | CDS
|
| From | 657517
|
| To | 658440
|
| Strand | +
|
| General name | ruvB
|
| Definition | Holliday junction DNA helicase RuvB
|
| nt length | 924
|
| aa length | 307
|
| m.w. | 35011.88
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE2780 ruvB holliday junction DNA helicase RuvB 366380:365412 | 233 | 1.6e-76
|
| mgen | WP_009885816.1 Holliday junction branch migration DNA helicase RuvB [Mycoplasma genitalium] | 507 | 0.0e+00
|
| mpul | WP_010925459.1 Holliday junction branch migration DNA helicase RuvB [Mycoplasma pulmonis] | 216 | 1.8e-70
|
| mmob | WP_041362842.1 Holliday junction branch migration DNA helicase RuvB [Mycoplasma mobile] | 209 | 1.6e-67
|
| mmyc | NP_975527.1 Holliday junction DNA helicase RuvB [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 201 | 1.1e-64
|
| mgal | WP_011113862.1 Holliday junction branch migration DNA helicase RuvB [Mycoplasma gallisepticum] | 307 | 3.3e-106
|
| uure | WP_012560325.1 Holliday junction branch migration DNA helicase RuvB [Ureaplasma urealyticum] | 228 | 4.9e-75
|
| bsub | NP_389624.2 mother cell sporulation ATPase [Bacillus subtilis subsp. subtilis str. 168] | 42 | 1.8e-05
|
| cace | WP_010965582.1 MULTISPECIES: Holliday junction branch migration DNA helicase RuvB [Clostridium] | 196 | 8.8e-62
|
| ecoli | NP_416374.1 Holliday junction branch migration complex subunit RuvB [Escherichia coli str. K-12 substr. MG1655] | 201 | 1.2e-63
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| RuvB_N | 1 | Holliday junction DNA helicase RuvB P-loop domain | 8-162 | 170.5 | 2.2e-50
|
| RuvB_C | 1 | RuvB C-terminal winged helix domain | 236-304 | 87.3 | 4.5e-25
|
| AAA | 1 | ATPase family associated with various cellular activities (AAA) | 41-165 | 71.3 | 1e-19
|
| AAA_5 | 1 | AAA domain (dynein-related subfamily) | 40-123 | 42.2 | 7.5e-11
|
| AAA_lid_4 | 1 | RuvB AAA lid domain | 167-222 | 31.0 | 1.5e-07
|
| RNA_helicase | 1 | RNA helicase | 41-113 | 24.5 | 2.7e-05
|
| AAA_3 | 1 | ATPase family associated with various cellular activities (AAA) | 40-83 | 24.0 | 2.8e-05
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874893.1| Holliday junction branch migration DNA helicase RuvB [Mycoplasma pneum... | 307/307 (100%) | 1616 | 0.0e+00
|
| ref|WP_054173279.1| Holliday junction branch migration DNA helicase RuvB [Mycoplasma pneum... | 306/307 (99%) | 1610 | 0.0e+00
|
| ref|WP_014325589.1| Holliday junction branch migration DNA helicase RuvB [Mycoplasma pneum... | 306/307 (99%) | 1606 | 0.0e+00
|
| ref|WP_014894679.1| Holliday junction branch migration DNA helicase RuvB [Mycoplasma genit... | 255/306 (83%) | 1308 | 4.5e-180
|
| ref|WP_009885816.1| Holliday junction branch migration DNA helicase RuvB [Mycoplasma genit... | 255/306 (83%) | 1306 | 7.2e-180
|
| ref|WP_014894486.1| Holliday junction branch migration DNA helicase RuvB [Mycoplasma genit... | 254/306 (83%) | 1299 | 1.1e-178
|
| ref|WP_027119956.1| Holliday junction branch migration DNA helicase RuvB [Mycoplasma testu... | 147/299 (49%) | 801 | 4.3e-103
|
| ref|WP_014886595.1| Holliday junction branch migration DNA helicase RuvB [Mycoplasma galli... | 145/302 (48%) | 792 | 1.2e-101
|
| ref|WP_014574751.1| Holliday junction branch migration DNA helicase RuvB [Mycoplasma galli... | 145/302 (48%) | 788 | 4.2e-101
|
| ref|WP_011113862.1| Holliday junction branch migration DNA helicase RuvB [Mycoplasma galli... | 144/302 (47%) | 786 | 7.2e-101
|
Maintained by Jun Ishikawa