General features
| Gene ID | MYPE530
|
| Type | CDS
|
| From | 64475
|
| To | 65299
|
| Strand | +
|
| General name |
|
| Definition | predicted GTPase, containing MMR_HSR1 domain
|
| nt length | 825
|
| aa length | 274
|
| m.w. | 31432.32
|
| COG | [R] General function prediction only
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN656 GTP-binding protein 781910:781095 | 152 | 1.1e-46
|
| mgen | WP_010869482.1 ribosome biogenesis GTPase YlqF [Mycoplasma genitalium] | 144 | 8.8e-44
|
| mpul | WP_041364367.1 ribosome biogenesis GTPase YlqF [Mycoplasma pulmonis] | 117 | 3.7e-33
|
| mmob | WP_011264639.1 ribosome biogenesis GTPase YlqF [Mycoplasma mobile] | 114 | 4.6e-32
|
| mmyc | NP_975415.1 GTP-binding protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 98 | 1.0e-25
|
| mgal | WP_011113881.1 ribosome biogenesis GTPase YlqF [Mycoplasma gallisepticum] | 148 | 4.5e-45
|
| uure | WP_004025730.1 ribosome biogenesis GTPase YlqF [Ureaplasma urealyticum] | 181 | 1.1e-57
|
| phyt | WP_011160652.1 ribosome biogenesis GTPase YlqF [Onion yellows phytoplasma] | 95 | 1.0e-24
|
| bsub | NP_389487.1 ribosome biogenesis GTPase A [Bacillus subtilis subsp. subtilis str. 168] | 121 | 6.2e-34
|
| cace | WP_010965068.1 ribosome biogenesis GTPase YlqF [Clostridium acetobutylicum] | 127 | 3.8e-36
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| MMR_HSR1 | 1 | 50S ribosome-binding GTPase | 118-223 | 64.3 | 9.7e-18
|
| FeoB_N | 1 | Ferrous iron transport protein B | 119-170 | 35.1 | 8.7e-09
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011076879.1| ribosome biogenesis GTPase YlqF [Mycoplasma penetrans] | 274/274 (100%) | 1378 | 0.0e+00
|
| ref|WP_038102480.1| ribosome biogenesis GTPase YlqF [Ureaplasma diversum] | 103/202 (50%) | 488 | 8.6e-57
|
| ref|WP_006688464.1| ribosome biogenesis GTPase YlqF [Ureaplasma parvum] | 99/206 (48%) | 471 | 3.5e-54
|
| ref|WP_004025730.1| ribosome biogenesis GTPase YlqF [Ureaplasma urealyticum] | 95/206 (46%) | 459 | 2.5e-52
|
| ref|WP_031488880.1| ribosome biogenesis GTPase YlqF [Ureaplasma canigenitalium] | 95/210 (45%) | 454 | 1.4e-51
|
| ref|WP_004024944.1| ribosome biogenesis GTPase YlqF [Mycoplasma iowae] | 96/200 (48%) | 436 | 5.9e-49
|
| ref|WP_033160014.1| ribosome biogenesis GTPase YlqF [Mycoplasma alvi] | 88/202 (43%) | 390 | 4.8e-42
|
| ref|WP_014325664.1| ribosome biogenesis GTPase YlqF [Mycoplasma pneumoniae] | 86/197 (43%) | 385 | 2.7e-41
|
| ref|WP_027121772.1| ribosome biogenesis GTPase YlqF [Mycoplasma imitans] | 88/200 (44%) | 385 | 2.8e-41
|
| ref|WP_010875013.1| ribosome biogenesis GTPase YlqF [Mycoplasma pneumoniae] | 86/197 (43%) | 384 | 2.8e-41
|
Maintained by Jun Ishikawa