General features
| Gene ID | MPN529
|
| Type | CDS
|
| From | 651246
|
| To | 650917
|
| Strand | -
|
| General name |
|
| Definition | bacterial histone-like protein
|
| nt length | 330
|
| aa length | 109
|
| m.w. | 12409.63
|
| COG | [-] not in COGs
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE2490 hupA DNA-binding histone-like protein HU-alpha 308379:308014 | 31 | 1.6e-03
|
| mgen | WP_009885811.1 hypothetical protein [Mycoplasma genitalium] | 185 | 3.0e-64
|
| mpul | WP_158304715.1 HU family DNA-binding protein [Mycoplasma pulmonis] | 32 | 3.8e-04
|
| mmyc | NP_975400.1 DNA-binding protein HU [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 28 | 1.2e-02
|
| mgal | WP_011113373.1 HU family DNA-binding protein [Mycoplasma gallisepticum] | 72 | 1.8e-19
|
| uure | WP_004026158.1 HU family DNA-binding protein [Ureaplasma urealyticum] | 35 | 5.2e-05
|
| phyt | WP_011160864.1 MULTISPECIES: HU family DNA-binding protein [Candidatus Phytoplasma asteris] | 38 | 1.5e-06
|
| bsub | NP_390160.1 non-specific DNA-binding protein HBsu [Bacillus subtilis subsp. subtilis str. 168] | 28 | 3.4e-02
|
| ecoli | NP_415432.1 integration host factor subunit beta [Escherichia coli str. K-12 substr. MG1655] | 23 | 3.5e+00
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Bac_DNA_binding | 1 | Bacterial DNA-binding protein | 12-99 | 45.1 | 8.7e-12
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874886.1| HU family DNA-binding protein [Mycoplasma pneumoniae] | 109/109 (100%) | 558 | 2.6e-72
|
| ref|WP_053344127.1| HU family DNA-binding protein [Mycoplasma pneumoniae] | 108/109 (99%) | 556 | 5.5e-72
|
| ref|WP_009885811.1| hypothetical protein [Mycoplasma genitalium] | 100/109 (91%) | 469 | 1.0e-58
|
| ref|WP_027333231.1| HU family DNA-binding protein [Mycoplasma gallisepticum] | 41/97 (42%) | 177 | 3.7e-14
|
| ref|WP_011883877.1| HU family DNA-binding protein [Mycoplasma gallisepticum] | 41/97 (42%) | 177 | 3.8e-14
|
| ref|WP_065165445.1| HU family DNA-binding protein [Mycoplasma gallisepticum] | 41/97 (42%) | 177 | 3.8e-14
|
| ref|WP_011113373.1| HU family DNA-binding protein [Mycoplasma gallisepticum] | 41/97 (42%) | 176 | 3.8e-14
|
| ref|WP_151059581.1| HU family DNA-binding protein [Mycoplasma gallisepticum] | 41/97 (42%) | 177 | 3.9e-14
|
| ref|WP_052664033.1| HU family DNA-binding protein [Mycoplasma alvi] | 38/97 (39%) | 174 | 6.7e-14
|
| ref|WP_027122365.1| HU family DNA-binding protein [Mycoplasma imitans] | 40/97 (41%) | 173 | 1.5e-13
|
Maintained by Jun Ishikawa