General features
| Gene ID | MYPE480
|
| Type | CDS
|
| From | 59137
|
| To | 58901
|
| Strand | -
|
| General name | rpsT
|
| Definition | ribosomal protein S20
|
| nt length | 237
|
| aa length | 78
|
| m.w. | 8740.16
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN541 rpsT ribosomal protein S20 661126:660863 | 44 | 2.8e-09
|
| mgen | WP_009885821.1 30S ribosomal protein S20 [Mycoplasma genitalium] | 43 | 3.9e-09
|
| mpul | WP_010925457.1 30S ribosomal protein S20 [Mycoplasma pulmonis] | 32 | 9.0e-05
|
| mmob | WP_011265040.1 30S ribosomal protein S20 [Mycoplasma mobile] | 30 | 5.5e-04
|
| mmyc | NP_975096.3 30S ribosomal protein S20 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 40 | 1.5e-07
|
| mgal | WP_011113356.1 30S ribosomal protein S20 [Mycoplasma gallisepticum] | 33 | 2.9e-05
|
| uure | WP_004025931.1 30S ribosomal protein S20 [Ureaplasma urealyticum] | 55 | 1.1e-13
|
| phyt | WP_011160456.1 MULTISPECIES: 30S ribosomal protein S20 [Candidatus Phytoplasma asteris] | 39 | 1.9e-07
|
| bsub | NP_390433.2 ribosomal protein S20 (BS20) [Bacillus subtilis subsp. subtilis str. 168] | 50 | 9.4e-11
|
| cace | WP_010964586.1 MULTISPECIES: 30S ribosomal protein S20 [Clostridium] | 42 | 5.2e-08
|
| ecoli | NP_414564.1 30S ribosomal subunit protein S20 [Escherichia coli str. K-12 substr. MG1655] | 30 | 2.9e-03
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_S20p | 1 | Ribosomal protein S20 | 2-75 | 53.2 | 3.4e-14
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011076874.1| 30S ribosomal protein S20 [Mycoplasma penetrans] | 78/78 (100%) | 376 | 1.7e-45
|
| ref|WP_004025193.1| 30S ribosomal protein S20 [Mycoplasma iowae] | 47/77 (61%) | 216 | 1.3e-20
|
| ref|WP_052606336.1| 30S ribosomal protein S20 [Acidithrix ferrooxidans] | 38/78 (48%) | 141 | 1.3e-09
|
| ref|WP_138190925.1| 30S ribosomal protein S20 [Firmicutes bacterium CS-1] | 35/76 (46%) | 136 | 6.6e-09
|
| ref|WP_063388018.1| MULTISPECIES: 30S ribosomal protein S20 [Aeribacillus] | 39/73 (53%) | 136 | 8.3e-09
|
| ref|WP_021065661.1| MULTISPECIES: 30S ribosomal protein S20 [Exiguobacterium] | 37/77 (48%) | 135 | 9.5e-09
|
| ref|WP_114119906.1| 30S ribosomal protein S20 [Ureaplasma urealyticum] | 34/73 (46%) | 134 | 1.5e-08
|
| ref|WP_006688746.1| 30S ribosomal protein S20 [Ureaplasma parvum] | 33/73 (45%) | 133 | 2.3e-08
|
| ref|WP_016829043.1| 30S ribosomal protein S20 [Ureaplasma urealyticum] | 33/73 (45%) | 132 | 2.4e-08
|
| ref|WP_004025931.1| 30S ribosomal protein S20 [Ureaplasma urealyticum] | 33/73 (45%) | 132 | 2.7e-08
|
Maintained by Jun Ishikawa