General features
| Gene ID | MYPE420
|
| Type | CDS
|
| From | 49185
|
| To | 51803
|
| Strand | +
|
| General name | valS
|
| Definition | valyl-tRNA synthetase
|
| nt length | 2619
|
| aa length | 872
|
| m.w. | 102544.19
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN480 valS valyl-tRNA synthetase 585919:583403 | 630 | 0.0e+00
|
| mgen | WP_010869437.1 valine--tRNA ligase [Mycoplasma genitalium] | 652 | 0.0e+00
|
| mpul | WP_010925061.1 valine--tRNA ligase [Mycoplasma pulmonis] | 607 | 0.0e+00
|
| mmob | WP_011264678.1 valine--tRNA ligase [Mycoplasma mobile] | 580 | 0.0e+00
|
| mmyc | NP_975302.1 valyl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 730 | 0.0e+00
|
| mgal | WP_011113825.1 valine--tRNA ligase [Mycoplasma gallisepticum] | 679 | 0.0e+00
|
| uure | WP_004025784.1 valine--tRNA ligase [Ureaplasma urealyticum] | 659 | 0.0e+00
|
| bsub | NP_390687.2 valyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] | 676 | 0.0e+00
|
| cace | WP_010965695.1 MULTISPECIES: valine--tRNA ligase [Clostridium] | 630 | 0.0e+00
|
| ecoli | NP_418679.1 valine--tRNA ligase [Escherichia coli str. K-12 substr. MG1655] | 544 | 0.0e+00
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| tRNA-synt_1 | 1 | tRNA synthetases class I (I, L, M and V) | 26-562 | 576.9 | 3.9e-173
|
| Anticodon_1 | 1 | Anticodon-binding domain of tRNA | 609-747 | 95.3 | 3.3e-27
|
| tRNA-synt_1g | 3 | tRNA synthetases class I (M) | 54-192, 364-436, 523-570 | 84.9 | 4.6e-24
|
| tRNA-synt_1_2 | 1 | Leucyl-tRNA synthetase, Domain 2 | 252-315 | 46.6 | 2.7e-12
|
| Val_tRNA-synt_C | 1 | Valyl tRNA synthetase tRNA binding arm | 811-869 | 40.9 | 1.8e-10
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_129374373.1| valine--tRNA ligase [Mycoplasma penetrans] | 859/860 (99%) | 4500 | 0.0e+00
|
| ref|WP_036452518.1| valine--tRNA ligase [Mycoplasma iowae] | 461/824 (55%) | 2177 | 0.0e+00
|
| ref|WP_004024642.1| valine--tRNA ligase [Mycoplasma iowae] | 461/824 (55%) | 2175 | 0.0e+00
|
| ref|WP_129692508.1| valine--tRNA ligase [Mycoplasma iowae] | 473/853 (55%) | 2173 | 0.0e+00
|
| ref|WP_156006505.1| valine--tRNA ligase [Spiroplasma tabanidicola] | 417/856 (48%) | 1963 | 0.0e+00
|
| ref|WP_004426919.1| valine--tRNA ligase [Mycoplasma yeatsii] | 403/860 (46%) | 1953 | 0.0e+00
|
| ref|WP_053946214.1| valine--tRNA ligase [Spiroplasma cantharicola] | 414/855 (48%) | 1943 | 0.0e+00
|
| ref|WP_042733289.1| valine--tRNA ligase [Mycoplasma yeatsii] | 401/860 (46%) | 1938 | 0.0e+00
|
| ref|WP_050517504.1| valine--tRNA ligase [Mycoplasma sp. HU2014] | 403/860 (46%) | 1937 | 0.0e+00
|
| ref|WP_014035153.1| valine--tRNA ligase [Mycoplasma putrefaciens] | 401/860 (46%) | 1936 | 0.0e+00
|
Maintained by Jun Ishikawa