General features
| Gene ID | MYPE3670
|
| Type | CDS
|
| From | 478578
|
| To | 479063
|
| Strand | +
|
| General name | greA
|
| Definition | transcription elongation factor
|
| nt length | 486
|
| aa length | 161
|
| m.w. | 18123.47
|
| COG | [K] Transcription
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN401 greA transcription elongation factor 483247:482765 | 167 | 9.4e-56
|
| mgen | WP_009885993.1 transcription elongation factor GreA [Mycoplasma genitalium] | 167 | 1.5e-55
|
| mpul | WP_041364168.1 transcription elongation factor GreA [Mycoplasma pulmonis] | 127 | 1.5e-39
|
| mmob | WP_011264955.1 transcription elongation factor GreA [Mycoplasma mobile] | 111 | 1.7e-33
|
| mmyc | NP_975295.1 transcription elongation factor GreA [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 145 | 5.2e-47
|
| mgal | WP_011113424.1 transcription elongation factor GreA [Mycoplasma gallisepticum] | 183 | 1.1e-61
|
| uure | WP_012560190.1 transcription elongation factor GreA [Ureaplasma urealyticum] | 117 | 6.3e-36
|
| phyt | WP_034172300.1 MULTISPECIES: transcription elongation factor GreA [Candidatus Phytoplasma] | 129 | 1.5e-40
|
| bsub | NP_390610.1 transcription elongation factor resolving backtracking / stalling [Bacillus subtilis subsp. subtilis str. 168] | 129 | 4.9e-40
|
| cace | WP_010966474.1 MULTISPECIES: transcription elongation factor GreA [Clostridium] | 117 | 2.1e-35
|
| ecoli | NP_417648.4 transcription elongation factor GreA [Escherichia coli str. K-12 substr. MG1655] | 107 | 2.2e-31
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| GreA_GreB_N | 1 | Transcription elongation factor, N-terminal | 7-76 | 99.8 | 6.9e-29
|
| GreA_GreB | 1 | Transcription elongation factor, GreA/GreB, C-term | 87-160 | 86.0 | 1.2e-24
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077194.1| transcription elongation factor GreA [Mycoplasma penetrans] | 161/161 (100%) | 830 | 4.0e-112
|
| ref|WP_027120205.1| transcription elongation factor GreA [Mycoplasma testudinis] | 102/161 (63%) | 506 | 9.9e-63
|
| ref|WP_027123932.1| transcription elongation factor GreA [Mycoplasma pirum] | 96/159 (60%) | 477 | 2.4e-58
|
| ref|WP_033160276.1| transcription elongation factor GreA [Mycoplasma alvi] | 98/159 (61%) | 474 | 6.8e-58
|
| ref|WP_004025397.1| transcription elongation factor GreA [Mycoplasma iowae] | 97/156 (62%) | 473 | 8.5e-58
|
| ref|WP_027122327.1| transcription elongation factor GreA [Mycoplasma imitans] | 93/152 (61%) | 467 | 8.1e-57
|
| ref|WP_011113424.1| transcription elongation factor GreA [Mycoplasma gallisepticum] | 94/154 (61%) | 464 | 2.5e-56
|
| ref|WP_085063787.1| transcription elongation factor GreA [Mycoplasma gallisepticum] | 94/153 (61%) | 461 | 6.9e-56
|
| ref|WP_010874757.1| transcription elongation factor GreA [Mycoplasma pneumoniae] | 88/161 (54%) | 424 | 2.4e-50
|
| ref|WP_014325511.1| transcription elongation factor GreA [Mycoplasma pneumoniae] | 88/161 (54%) | 424 | 2.8e-50
|
Maintained by Jun Ishikawa