General features

Gene IDMPN352
TypeCDS
From420240
To418741
Strand-
General namesigA
DefinitionSigma-70 Factor Family
nt length1500
aa length499
m.w.57796.39
COG[K] Transcription

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mypeMYPE8360 RNA polymerase sigma factor, contains similarity to Pfam domain Sigma-70 1113399:11121163934.2e-135
mgenWP_009885787.1 RNA polymerase sigma factor [Mycoplasma genitalium]8550.0e+00
mpulWP_041364105.1 RNA polymerase sigma factor [Mycoplasma pulmonis]2074.5e-63
mmobWP_011264809.1 RNA polymerase sigma factor [Mycoplasma mobile]2302.9e-71
mmycNP_975452.1 RNA polymerase sigma-A factor [Mycoplasma mycoides subsp. mycoides SC str. PG1]2753.3e-88
mgalWP_011113635.1 RNA polymerase sigma factor [Mycoplasma gallisepticum]4772.8e-165
uureWP_004025598.1 RNA polymerase sigma factor [Ureaplasma urealyticum]3151.2e-104
phytWP_011160415.1 MULTISPECIES: DNA-directed RNA polymerase sigma-70 factor [Candidatus Phytoplasma asteris]447.2e-07
bsubNP_389416.1 RNA polymerase sporulation-specific sigma factor (sigma-G) [Bacillus subtilis subsp. subtilis str. 168]807.1e-18
caceWP_010964612.1 MULTISPECIES: RNA polymerase sigma factor RpoD [Clostridium]2383.7e-75
ecoliNP_417539.1 RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli str. K-12 substr. MG1655]2368.7e-72

*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result:



ModelNo.Descrip tionPosition (aa)ScoreE-value

Sigma70_r31Sigma-70 region 3331-41173.11.5e-20

Sigma70_r21Sigma-70 region 2252-32170.76.6e-20

Sigma70_r41Sigma-70, region 4429-48043.91.2e-11

BLAST search result (top 10 hits)

ID DescriptionIdentityScoreE-value
ref|WP_010874708.1| RNA polymerase sigma factor [Mycoplasma pneumoniae] 499/499 (100%)26170.0e+00
ref|WP_054175410.1| RNA polymerase sigma factor [Mycoplasma pneumoniae]498/499 (99%)26120.0e+00
ref|WP_009885787.1| RNA polymerase sigma factor [Mycoplasma genitalium]437/499 (87%)22100.0e+00
ref|WP_014894634.1| RNA polymerase sigma factor [Mycoplasma genitalium]436/499 (87%)22080.0e+00
ref|WP_014894235.1| RNA polymerase sigma factor [Mycoplasma genitalium]436/499 (87%)22070.0e+00
ref|WP_159241656.1| RNA polymerase sigma factor, partial [Mycoplasma pneumoniae]395/395 (100%)20770.0e+00
ref|WP_084266137.1| RNA polymerase sigma factor [Mycoplasma testudinis]253/423 (59%)13046.4e-172
ref|WP_052663082.1| RNA polymerase sigma factor [Mycoplasma pirum]254/433 (58%)12761.2e-168
ref|WP_052663924.1| RNA polymerase sigma factor [Mycoplasma alvi]253/429 (58%)12518.7e-165
ref|WP_027121895.1| RNA polymerase sigma factor [Mycoplasma imitans]242/417 (58%)12401.7e-161

Maintained by Jun Ishikawa