General features
| Gene ID | MPN315
|
| Type | CDS
|
| From | 373829
|
| To | 374755
|
| Strand | +
|
| General name | yabC
|
| Definition | SAM-dependent methytransferase
|
| nt length | 927
|
| aa length | 308
|
| m.w. | 35242.68
|
| COG | [-] not in COGs
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE3220 methyltransferase 424743:425681 | 181 | 9.9e-57
|
| mgen | WP_009885760.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Mycoplasma genitalium] | 412 | 1.2e-147
|
| mpul | WP_010925294.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Mycoplasma pulmonis] | 176 | 3.7e-55
|
| mmob | WP_011264900.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Mycoplasma mobile] | 167 | 1.7e-51
|
| mmyc | NP_975572.1 S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 192 | 3.1e-61
|
| mgal | WP_011113646.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Mycoplasma gallisepticum] | 229 | 1.0e-75
|
| uure | WP_012560271.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Ureaplasma urealyticum] | 157 | 1.0e-47
|
| phyt | WP_041624894.1 ribosomal RNA small subunit methyltransferase H [Onion yellows phytoplasma] | 176 | 2.9e-55
|
| bsub | NP_389397.1 16S rRNA m4C1402 methyltransferase [Bacillus subtilis subsp. subtilis str. 168] | 202 | 1.5e-64
|
| cace | WP_010965431.1 MULTISPECIES: 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Clostridium] | 232 | 5.0e-76
|
| ecoli | NP_414624.1 16S rRNA m(4)C1402 methyltransferase [Escherichia coli str. K-12 substr. MG1655] | 187 | 1.6e-58
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Methyltransf_5 | 1 | MraW methylase family | 5-308 | 373.3 | 1.1e-111
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874671.1| 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Mycoplasma pneu... | 308/308 (100%) | 1609 | 0.0e+00
|
| ref|WP_014325456.1| 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Mycoplasma pneu... | 306/308 (99%) | 1599 | 0.0e+00
|
| ref|WP_009885760.1| 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Mycoplasma geni... | 201/307 (65%) | 1058 | 4.2e-142
|
| ref|WP_014894625.1| 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Mycoplasma geni... | 201/307 (65%) | 1058 | 5.4e-142
|
| ref|WP_014894227.1| 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Mycoplasma geni... | 199/307 (64%) | 1043 | 8.2e-140
|
| ref|WP_027121908.1| 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Mycoplasma imit... | 139/307 (45%) | 622 | 7.2e-76
|
| ref|WP_049685427.1| 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Thermoanaerobac... | 133/301 (44%) | 619 | 1.5e-75
|
| ref|WP_009611109.1| 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Caldanaerobacte... | 135/301 (44%) | 615 | 5.8e-75
|
| ref|WP_022587364.1| 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Caldanaerobacte... | 135/301 (44%) | 615 | 6.8e-75
|
| ref|WP_120166030.1| 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Thermohalobacte... | 133/301 (44%) | 605 | 2.6e-73
|
Maintained by Jun Ishikawa