General features

Gene IDMYPE2780
TypeCDS
From366380
To365412
Strand-
General nameruvB
Definitionholliday junction DNA helicase RuvB
nt length969
aa length322
m.w.36669.08
COG[L] Replication, recombination and repair

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN536 ruvB Holliday junction DNA helicase RuvB 657517:6584402339.8e-77
mgenWP_009885816.1 Holliday junction branch migration DNA helicase RuvB [Mycoplasma genitalium]2262.4e-74
mpulWP_010925459.1 Holliday junction branch migration DNA helicase RuvB [Mycoplasma pulmonis]2243.4e-73
mmobWP_041362842.1 Holliday junction branch migration DNA helicase RuvB [Mycoplasma mobile]2181.0e-70
mmycNP_975527.1 Holliday junction DNA helicase RuvB [Mycoplasma mycoides subsp. mycoides SC str. PG1]2141.4e-69
mgalWP_011113862.1 Holliday junction branch migration DNA helicase RuvB [Mycoplasma gallisepticum]2566.5e-86
uureWP_012560325.1 Holliday junction branch migration DNA helicase RuvB [Ureaplasma urealyticum]2701.8e-91
bsubYP_054590.1 Holliday junction DNA helicase, ATP-dependent component [Bacillus subtilis subsp. subtilis str. 168]2213.9e-71
caceWP_010965582.1 MULTISPECIES: Holliday junction branch migration DNA helicase RuvB [Clostridium]2163.6e-69
ecoliNP_416374.1 Holliday junction branch migration complex subunit RuvB [Escherichia coli str. K-12 substr. MG1655]2056.8e-65

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result:



ModelNo.Descrip tionPosition (aa)ScoreE-value

RuvB_N1Holliday junction DNA helicase RuvB P-loop domain6-162184.01.6e-54

RuvB_C1RuvB C-terminal winged helix domain235-30284.82.7e-24

AAA1ATPase family associated with various cellular activities (AAA)42-16569.05e-19

AAA_51AAA domain (dynein-related subfamily)41-15838.41.1e-09

AAA_lid_41RuvB AAA lid domain167-22231.61e-07

RNA_helicase1RNA helicase42-12325.01.9e-05

BLAST search result (top 10 hits)

ID DescriptionIdentityScoreE-value
ref|WP_011077106.1| Holliday junction branch migration DNA helicase RuvB [Mycoplasma penet...322/322 (100%)16430.0e+00
ref|WP_129374493.1| Holliday junction branch migration DNA helicase RuvB [Mycoplasma penet...321/322 (99%)16350.0e+00
ref|WP_004024884.1| Holliday junction branch migration DNA helicase RuvB [Mycoplasma iowae...185/308 (60%)9711.3e-128
ref|WP_038102952.1| Holliday junction branch migration DNA helicase RuvB [Ureaplasma diver...151/308 (49%)7627.0e-97
ref|WP_031488983.1| Holliday junction branch migration DNA helicase RuvB [Ureaplasma canig...143/307 (46%)7574.3e-96
ref|WP_088447531.1| Holliday junction branch migration DNA helicase RuvB [Ureaplasma parvu...141/305 (46%)6913.9e-86
ref|WP_006689015.1| Holliday junction branch migration DNA helicase RuvB [Ureaplasma parvu...141/305 (46%)6914.2e-86
ref|WP_012560325.1| Holliday junction branch migration DNA helicase RuvB [Ureaplasma ureal...138/305 (45%)6914.3e-86
ref|WP_004025727.1| Holliday junction branch migration DNA helicase RuvB [Ureaplasma ureal...138/305 (45%)6914.7e-86
ref|WP_004026932.1| Holliday junction branch migration DNA helicase RuvB [Ureaplasma ureal...138/305 (45%)6905.2e-86

Maintained by Jun Ishikawa