General features
| Gene ID | MYPE1840
|
| Type | CDS
|
| From | 231463
|
| To | 233568
|
| Strand | +
|
| General name | ligA
|
| Definition | NAD-dependent DNA ligase
|
| nt length | 2106
|
| aa length | 701
|
| m.w. | 80829.36
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN357 lig DNA ligase 427511:425535 | 594 | 0.0e+00
|
| mgen | WP_009885791.1 DNA ligase (NAD(+)) LigA [Mycoplasma genitalium] | 540 | 0.0e+00
|
| mpul | WP_010925193.1 DNA ligase (NAD(+)) LigA [Mycoplasma pulmonis] | 338 | 2.8e-108
|
| mmob | WP_011264715.1 DNA ligase (NAD(+)) LigA [Mycoplasma mobile] | 429 | 3.5e-143
|
| mmyc | NP_975740.1 DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 523 | 1.3e-179
|
| mgal | WP_011113960.1 NAD-dependent DNA ligase LigA [Mycoplasma gallisepticum] | 504 | 7.9e-172
|
| uure | WP_004026162.1 NAD-dependent DNA ligase LigA [Ureaplasma urealyticum] | 593 | 0.0e+00
|
| phyt | WP_011160788.1 MULTISPECIES: DNA ligase (NAD(+)) LigA [Candidatus Phytoplasma asteris] | 479 | 8.6e-163
|
| bsub | NP_388544.1 DNA ligase (NAD-dependent) [Bacillus subtilis subsp. subtilis str. 168] | 529 | 0.0e+00
|
| cace | WP_010965961.1 NAD-dependent DNA ligase LigA [Clostridium acetobutylicum] | 393 | 8.8e-129
|
| ecoli | NP_416906.1 DNA ligase [Escherichia coli str. K-12 substr. MG1655] | 440 | 7.9e-147
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| DNA_ligase_aden | 1 | NAD-dependent DNA ligase adenylation domain | 22-328 | 397.4 | 4.1e-119
|
| DNA_ligase_OB | 1 | NAD-dependent DNA ligase OB-fold domain | 332-409 | 95.8 | 1e-27
|
| HHH_2 | 1 | Helix-hairpin-helix motif | 540-603 | 71.4 | 5e-20
|
| BRCT | 1 | BRCA1 C Terminus (BRCT) domain | 633-696 | 43.5 | 3.1e-11
|
| DNA_ligase_ZBD | 1 | NAD-dependent DNA ligase C4 zinc finger domain | 418-442 | 31.9 | 1e-07
|
| HHH_5 | 1 | Helix-hairpin-helix domain | 542-591 | 29.0 | 1.2e-06
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077011.1| DNA ligase (NAD(+)) LigA [Mycoplasma penetrans] | 700/701 (99%) | 3679 | 0.0e+00
|
| ref|WP_129374594.1| DNA ligase (NAD(+)) LigA [Mycoplasma penetrans] | 699/701 (99%) | 3676 | 0.0e+00
|
| ref|WP_004025079.1| DNA ligase (NAD(+)) LigA [Mycoplasma iowae] | 403/684 (58%) | 2027 | 0.0e+00
|
| ref|WP_027119445.1| DNA ligase (NAD(+)) LigA [Mycoplasma testudinis] | 316/676 (46%) | 1571 | 0.0e+00
|
| ref|WP_038102142.1| NAD-dependent DNA ligase LigA [Ureaplasma diversum] | 330/683 (48%) | 1543 | 0.0e+00
|
| ref|WP_004026263.1| DNA ligase (NAD(+)) LigA [Ureaplasma urealyticum] | 330/675 (48%) | 1536 | 0.0e+00
|
| ref|WP_114119882.1| NAD-dependent DNA ligase LigA [Ureaplasma urealyticum] | 330/675 (48%) | 1535 | 0.0e+00
|
| ref|WP_004026844.1| DNA ligase (NAD(+)) LigA [Ureaplasma urealyticum] | 330/675 (48%) | 1534 | 0.0e+00
|
| ref|WP_014325482.1| DNA ligase (NAD(+)) LigA [Mycoplasma pneumoniae] | 297/675 (44%) | 1533 | 0.0e+00
|
| ref|WP_014574957.1| DNA ligase (NAD(+)) LigA [Mycoplasma pneumoniae] | 297/675 (44%) | 1532 | 0.0e+00
|
Maintained by Jun Ishikawa