General features
| Gene ID | MYPE1050
|
| Type | CDS
|
| From | 130032
|
| To | 131333
|
| Strand | +
|
| General name | deoA
|
| Definition | thymidine phosphorylase
|
| nt length | 1302
|
| aa length | 433
|
| m.w. | 48957.19
|
| COG | [F] Nucleotide transport and metabolism
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN064 deoA thymidine phosphorylase 80414:81679 | 337 | 2.3e-114
|
| mgen | WP_009885713.1 thymidine phosphorylase [Mycoplasma genitalium] | 352 | 1.3e-120
|
| mpul | WP_010925447.1 thymidine phosphorylase [Mycoplasma pulmonis] | 335 | 2.4e-113
|
| mmob | WP_011265056.1 thymidine phosphorylase [Mycoplasma mobile] | 309 | 1.5e-103
|
| mmyc | NP_975803.1 thymidine phosphorylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 296 | 4.1e-98
|
| mgal | WP_011113841.1 thymidine phosphorylase [Mycoplasma gallisepticum] | 332 | 2.4e-112
|
| uure | WP_004027212.1 thymidine phosphorylase [Ureaplasma urealyticum] | 394 | 2.1e-136
|
| bsub | NP_391819.2 pyrimidine-nucleoside phosphorylase [Bacillus subtilis subsp. subtilis str. 168] | 297 | 6.2e-98
|
| cace | WP_010964854.1 MULTISPECIES: pyrimidine-nucleoside phosphorylase [Clostridium] | 299 | 1.0e-98
|
| ecoli | NP_418799.1 thymidine phosphorylase [Escherichia coli str. K-12 substr. MG1655] | 239 | 1.4e-75
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Glycos_transf_3 | 1 | Glycosyl transferase family, a/b domain | 76-305 | 101.2 | 6.9e-29
|
| PYNP_C | 1 | Pyrimidine nucleoside phosphorylase C-terminal domain | 345-417 | 84.2 | 3.5e-24
|
| Glycos_trans_3N | 1 | Glycosyl transferase family, helical bundle domain | 5-66 | 51.2 | 8.5e-14
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011076933.1| thymidine phosphorylase [Mycoplasma penetrans] | 433/433 (100%) | 2230 | 0.0e+00
|
| ref|WP_036451665.1| thymidine phosphorylase [Mycoplasma iowae] | 237/433 (54%) | 1221 | 7.6e-163
|
| ref|WP_004025151.1| thymidine phosphorylase [Mycoplasma iowae] | 236/433 (54%) | 1216 | 3.6e-162
|
| ref|WP_006688763.1| thymidine phosphorylase [Ureaplasma parvum] | 204/433 (47%) | 1012 | 2.9e-131
|
| ref|WP_006689156.1| thymidine phosphorylase [Ureaplasma parvum] | 204/433 (47%) | 1011 | 4.9e-131
|
| ref|WP_004027212.1| thymidine phosphorylase [Ureaplasma urealyticum] | 203/433 (46%) | 1011 | 4.9e-131
|
| ref|WP_004025924.1| thymidine phosphorylase [Ureaplasma urealyticum] | 202/433 (46%) | 1009 | 9.7e-131
|
| ref|WP_004026878.1| thymidine phosphorylase [Ureaplasma urealyticum] | 202/433 (46%) | 1009 | 1.0e-130
|
| ref|WP_016828920.1| thymidine phosphorylase [Ureaplasma urealyticum] | 201/433 (46%) | 1007 | 1.6e-130
|
| ref|WP_051749400.1| thymidine phosphorylase [Ureaplasma diversum] | 200/431 (46%) | 999 | 2.7e-129
|
Maintained by Jun Ishikawa