General features
| Gene ID | MYPE10220
|
| Type | CDS
|
| From | 1333993
|
| To | 1333337
|
| Strand | -
|
| General name | rnhB
|
| Definition | ribonuclease HII
|
| nt length | 657
|
| aa length | 218
|
| m.w. | 25049.05
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mgen | WP_009885740.1 ribonuclease HIII [Mycoplasma genitalium] | 32 | 2.5e-03
|
| mpul | WP_010925104.1 ribonuclease HII (RNase HII) [Mycoplasma pulmonis] | 27 | 1.0e-01
|
| mmob | WP_011265144.1 ribonuclease HII [Mycoplasma mobile] | 141 | 7.4e-44
|
| mmyc | NP_975416.1 ribonuclease H II [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 163 | 1.9e-52
|
| mgal | WP_011113653.1 ribonuclease HIII [Mycoplasma gallisepticum] | 32 | 3.3e-03
|
| uure | WP_004026007.1 ribonuclease HIII [Ureaplasma urealyticum] | 31 | 1.0e-02
|
| phyt | WP_011160980.1 MULTISPECIES: ribonuclease HIII [Candidatus Phytoplasma asteris] | 28 | 3.4e-02
|
| bsub | NP_389488.1 ribonuclease HII [Bacillus subtilis subsp. subtilis str. 168] | 116 | 5.3e-33
|
| cace | WP_010965069.1 MULTISPECIES: ribonuclease HII [Clostridium] | 102 | 2.1e-27
|
| ecoli | NP_414725.1 RNase HII [Escherichia coli str. K-12 substr. MG1655] | 105 | 2.0e-29
|
*mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| RNase_HII | 1 | Ribonuclease HII | 31-208 | 94.7 | 6.4e-27
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_044891436.1| ribonuclease HII [Mycoplasma penetrans] | 207/207 (100%) | 1074 | 1.3e-147
|
| ref|WP_129374481.1| ribonuclease HII [Mycoplasma penetrans] | 206/207 (99%) | 1067 | 1.7e-146
|
| ref|WP_004025411.1| ribonuclease HII [Mycoplasma iowae] | 101/203 (49%) | 485 | 5.5e-58
|
| ref|WP_129623166.1| ribonuclease HII [Mycoplasma columbinasale] | 92/193 (47%) | 466 | 3.1e-55
|
| ref|WP_036499406.1| ribonuclease HII [Mycoplasma testudinis] | 96/197 (48%) | 462 | 1.4e-54
|
| ref|WP_014035140.1| ribonuclease HII [Mycoplasma putrefaciens] | 99/201 (49%) | 458 | 7.1e-54
|
| ref|WP_015587307.1| ribonuclease HII [Mycoplasma putrefaciens] | 100/201 (49%) | 458 | 7.7e-54
|
| ref|WP_029513149.1| ribonuclease HII [Mycoplasma primatum] | 97/193 (50%) | 456 | 1.1e-53
|
| ref|WP_033160013.1| ribonuclease HII [Mycoplasma alvi] | 99/200 (49%) | 454 | 3.2e-53
|
| ref|WP_004426813.1| ribonuclease HII [Mycoplasma yeatsii] | 97/197 (49%) | 447 | 3.4e-52
|
Maintained by Jun Ishikawa