General features
| Gene ID | MYPE10180
|
| Type | CDS
|
| From | 1331143
|
| To | 1330163
|
| Strand | -
|
| General name | rplC
|
| Definition | ribosomal protein L3
|
| nt length | 981
|
| aa length | 326
|
| m.w. | 36081.20
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN165 rplC ribosomal protein L3 217970:218833 | 243 | 4.6e-81
|
| mgen | WP_010869358.1 50S ribosomal protein L3 [Mycoplasma genitalium] | 231 | 5.6e-77
|
| mpul | WP_010925390.1 50S ribosomal protein L3 [Mycoplasma pulmonis] | 163 | 3.0e-50
|
| mmob | WP_011264755.1 50S ribosomal protein L3 [Mycoplasma mobile] | 175 | 2.3e-54
|
| mmyc | NP_975721.1 50S ribosomal protein L3 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 173 | 1.3e-54
|
| mgal | WP_011113280.1 50S ribosomal protein L3 [Mycoplasma gallisepticum] | 248 | 8.8e-84
|
| uure | WP_004025649.1 50S ribosomal protein L3 [Ureaplasma urealyticum] | 243 | 9.6e-82
|
| bsub | NP_387997.1 ribosomal protein L3 (BL3) [Bacillus subtilis subsp. subtilis str. 168] | 182 | 1.2e-57
|
| cace | WP_010966412.1 MULTISPECIES: 50S ribosomal protein L3 [Clostridium] | 188 | 5.0e-60
|
| ecoli | NP_417779.1 50S ribosomal subunit protein L3 [Escherichia coli str. K-12 substr. MG1655] | 154 | 1.6e-46
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_L3 | 1 | Ribosomal protein L3 | 112-198 | 49.4 | 3.2e-13
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077831.1| 50S ribosomal protein L3 [Mycoplasma penetrans] | 310/310 (100%) | 1612 | 0.0e+00
|
| ref|WP_004024704.1| 50S ribosomal protein L3 [Mycoplasma iowae] | 172/220 (78%) | 931 | 2.5e-123
|
| ref|WP_038101565.1| 50S ribosomal protein L3 [Ureaplasma diversum] | 130/236 (55%) | 656 | 7.7e-82
|
| ref|WP_156940254.1| 50S ribosomal protein L3 [Mycoplasma alvi] | 123/228 (53%) | 648 | 1.8e-80
|
| ref|WP_027122176.1| 50S ribosomal protein L3 [Mycoplasma imitans] | 125/235 (53%) | 645 | 3.1e-80
|
| ref|WP_027124220.1| 50S ribosomal protein L3 [Mycoplasma pirum] | 124/226 (54%) | 638 | 5.4e-79
|
| ref|WP_011113280.1| 50S ribosomal protein L3 [Mycoplasma gallisepticum] | 122/219 (55%) | 634 | 1.9e-78
|
| ref|WP_151059545.1| 50S ribosomal protein L3 [Mycoplasma gallisepticum] | 122/219 (55%) | 633 | 2.6e-78
|
| ref|WP_014885803.1| 50S ribosomal protein L3 [Mycoplasma gallisepticum] | 122/219 (55%) | 631 | 4.2e-78
|
| ref|WP_011883698.1| 50S ribosomal protein L3 [Mycoplasma gallisepticum] | 122/219 (55%) | 630 | 5.7e-78
|
Maintained by Jun Ishikawa