General features
| Gene ID | MYPE10170
|
| Type | CDS
|
| From | 1330163
|
| To | 1329522
|
| Strand | -
|
| General name | rplD
|
| Definition | ribosomal protein L4
|
| nt length | 642
|
| aa length | 213
|
| m.w. | 24087.63
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN166 rplD ribosomal protein L4 218833:219471 | 166 | 1.2e-53
|
| mgen | WP_009885836.1 50S ribosomal protein L4 [Mycoplasma genitalium] | 173 | 1.2e-56
|
| mpul | WP_010925388.1 50S ribosomal protein L4 [Mycoplasma pulmonis] | 115 | 7.4e-33
|
| mmob | WP_011264756.1 50S ribosomal protein L4 [Mycoplasma mobile] | 136 | 5.5e-41
|
| mmyc | NP_975720.1 50S ribosomal protein L4 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 151 | 9.4e-48
|
| mgal | WP_011113281.1 50S ribosomal protein L4 [Mycoplasma gallisepticum] | 201 | 3.2e-67
|
| uure | WP_004025646.1 50S ribosomal protein L4 [Ureaplasma urealyticum] | 200 | 6.2e-67
|
| phyt | WP_011160576.1 50S ribosomal protein L4 [Onion yellows phytoplasma] | 121 | 3.1e-36
|
| bsub | NP_387998.1 ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. 168] | 133 | 6.3e-40
|
| cace | WP_010966411.1 MULTISPECIES: 50S ribosomal protein L4 [Clostridium] | 135 | 5.2e-41
|
| ecoli | NP_417778.1 50S ribosomal subunit protein L4 [Escherichia coli str. K-12 substr. MG1655] | 102 | 5.3e-28
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_L4 | 1 | Ribosomal protein L4/L1 family | 28-210 | 192.7 | 5.1e-57
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077830.1| 50S ribosomal protein L4 [Mycoplasma penetrans] | 213/213 (100%) | 1119 | 1.6e-154
|
| ref|WP_004024703.1| 50S ribosomal protein L4 [Mycoplasma iowae] | 145/213 (68%) | 778 | 1.4e-102
|
| ref|WP_014885804.1| 50S ribosomal protein L4 [Mycoplasma gallisepticum] | 109/210 (51%) | 513 | 2.5e-62
|
| ref|WP_011113281.1| 50S ribosomal protein L4 [Mycoplasma gallisepticum] | 109/210 (51%) | 510 | 7.0e-62
|
| ref|WP_038101563.1| 50S ribosomal protein L4 [Ureaplasma diversum] | 98/172 (56%) | 510 | 7.2e-62
|
| ref|WP_027122177.1| 50S ribosomal protein L4 [Mycoplasma imitans] | 109/210 (51%) | 510 | 7.9e-62
|
| ref|WP_004025646.1| 50S ribosomal protein L4 [Ureaplasma urealyticum] | 94/172 (54%) | 508 | 1.5e-61
|
| ref|WP_011883700.1| 50S ribosomal protein L4 [Mycoplasma gallisepticum] | 108/210 (51%) | 508 | 1.5e-61
|
| ref|WP_006689152.1| 50S ribosomal protein L4 [Ureaplasma parvum] | 94/172 (54%) | 508 | 1.6e-61
|
| ref|WP_006688823.1| 50S ribosomal protein L4 [Ureaplasma parvum] | 94/172 (54%) | 506 | 3.3e-61
|
Maintained by Jun Ishikawa